View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_313 (Length: 249)

Name: NF7829A_low_313
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_313
NF7829A_low_313
[»] chr1 (14 HSPs)
chr1 (13-249)||(3544598-3544835)
chr1 (24-249)||(1248094-1248319)
chr1 (13-149)||(28358396-28358533)
chr1 (9-151)||(19014477-19014619)
chr1 (45-249)||(5808987-5809192)
chr1 (21-204)||(52691922-52692106)
chr1 (13-249)||(13867330-13867567)
chr1 (21-159)||(40563063-40563202)
chr1 (38-151)||(45795710-45795824)
chr1 (22-92)||(27393455-27393525)
chr1 (45-129)||(3074271-3074356)
chr1 (13-102)||(38070386-38070475)
chr1 (13-102)||(45795829-45795918)
chr1 (217-249)||(45795612-45795644)
[»] chr6 (11 HSPs)
chr6 (13-249)||(14843634-14843871)
chr6 (13-150)||(19350449-19350587)
chr6 (22-153)||(32186185-32186317)
chr6 (13-150)||(29976505-29976650)
chr6 (13-150)||(14686505-14686643)
chr6 (21-204)||(25350673-25350857)
chr6 (13-144)||(7956168-7956299)
chr6 (40-124)||(10362664-10362749)
chr6 (25-153)||(26514226-26514355)
chr6 (21-93)||(10919969-10920041)
chr6 (218-249)||(14686711-14686742)
[»] chr5 (8 HSPs)
chr5 (13-249)||(476619-476856)
chr5 (13-194)||(380362-380544)
chr5 (21-151)||(42259784-42259915)
chr5 (32-151)||(42039221-42039341)
chr5 (66-151)||(22176376-22176462)
chr5 (33-102)||(15862194-15862263)
chr5 (21-62)||(22437810-22437851)
chr5 (40-104)||(4297833-4297897)
[»] scaffold0043 (1 HSPs)
scaffold0043 (13-249)||(34106-34343)
[»] chr3 (14 HSPs)
chr3 (13-249)||(31675337-31675574)
chr3 (13-249)||(31920848-31921085)
chr3 (13-150)||(19875748-19875886)
chr3 (21-102)||(25024349-25024430)
chr3 (13-151)||(40513221-40513360)
chr3 (21-204)||(53941754-53941938)
chr3 (21-150)||(55367115-55367245)
chr3 (40-124)||(52250648-52250733)
chr3 (13-102)||(48930280-48930369)
chr3 (63-150)||(14307713-14307801)
chr3 (13-151)||(34829904-34830036)
chr3 (13-147)||(46190000-46190135)
chr3 (13-150)||(18381564-18381701)
chr3 (217-249)||(34829825-34829857)
[»] chr7 (11 HSPs)
chr7 (13-150)||(27218619-27218757)
chr7 (21-204)||(20349415-20349598)
chr7 (13-147)||(19544899-19545034)
chr7 (21-151)||(17504064-17504195)
chr7 (21-151)||(17549019-17549150)
chr7 (21-147)||(34103985-34104112)
chr7 (45-93)||(8752925-8752973)
chr7 (21-102)||(11341350-11341431)
chr7 (45-102)||(25018847-25018904)
chr7 (40-81)||(41805282-41805323)
chr7 (21-93)||(23054476-23054548)
[»] chr2 (5 HSPs)
chr2 (13-150)||(6823916-6824054)
chr2 (13-151)||(11196855-11196994)
chr2 (40-123)||(10689087-10689170)
chr2 (40-124)||(43310790-43310875)
chr2 (40-102)||(26146769-26146831)
[»] chr4 (9 HSPs)
chr4 (45-249)||(2071946-2072151)
chr4 (21-249)||(43516253-43516482)
chr4 (22-150)||(9690927-9691056)
chr4 (58-147)||(52617407-52617497)
chr4 (22-147)||(56337006-56337132)
chr4 (45-147)||(36183045-36183148)
chr4 (34-151)||(7098986-7099104)
chr4 (40-78)||(38296284-38296322)
chr4 (22-183)||(55725212-55725374)
[»] scaffold0189 (1 HSPs)
scaffold0189 (21-150)||(6593-6723)
[»] chr8 (10 HSPs)
chr8 (21-153)||(25193590-25193723)
chr8 (13-249)||(6245497-6245725)
chr8 (21-147)||(15439632-15439752)
chr8 (21-147)||(15530936-15531056)
chr8 (45-158)||(29721439-29721553)
chr8 (13-150)||(36025026-36025164)
chr8 (45-147)||(37165650-37165753)
chr8 (13-93)||(18187709-18187789)
chr8 (45-150)||(12341072-12341178)
chr8 (43-81)||(12332423-12332461)
[»] scaffold0048 (1 HSPs)
scaffold0048 (41-93)||(63824-63876)
[»] scaffold0131 (1 HSPs)
scaffold0131 (13-55)||(4053-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (13-55)||(134351-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (13-55)||(312178-312220)
scaffold0002 (13-55)||(327632-327674)
[»] scaffold0026 (1 HSPs)
scaffold0026 (42-102)||(67634-67694)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 3544598 - 3544835
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  3544598 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtac 3544697  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3544698 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggc 3544797  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3544798 gtgtctacttacttttggtatgacaggtggcttggtga 3544835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 24 - 249
Target Start/End: Original strand, 1248094 - 1248319
Alignment:
Q  24 ttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtacttcatcttggtg 123  Q
    ||||| |||| || |||||||||||||||| || |||| ||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||    
T  1248094 ttggtggataaaggtggtttttggtataggctgttggtggcgagatatggtgaggaggtagggaggttggaggtaggggctggagtacttcatcttggtg 1248193  T
Q  124 gaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggcgtgtctacttac 223  Q
    || ||||||||||||||||||||||||| ||||||| | || |||||||||||||| |||| |||| ||||  ||||| || |||||| || ||||||||    
T  1248194 gagggaagtagtgaagattagggatggggtgggtgaagctgcggggagttggtttgaggagagggtgtcgaagagggtagggaatggcttggctacttac 1248293  T
Q  224 ttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||    
T  1248294 ttttggtatgacaggtggcttggtga 1248319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 28358533 - 28358396
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    ||||| || |||||||||||||||  || |||||||| |||||| |||| |||||||||||||||||||||||| ||||||||| | |||||||||||      
T  28358533 gttggagattgttggtagatagaggcgggttttggtacagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccggagtgt 28358434  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatg 149  Q
     ||||||||||||| |||||||| ||||||||||||||    
T  28358433 ctcatcttggtggagggaagtagcgaagattagggatg 28358396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 9 - 151
Target Start/End: Original strand, 19014477 - 19014619
Alignment:
Q  9 tggagttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggag 108  Q
    ||||||||||| |||||||| || |||| ||| |||||||||   ||| |||| |||||||||||||||||| ||||| |||||||||| ||||||||||    
T  19014477 tggagttggcggatgttggtggacagaggtgggttttggtattaagtgttggtggcgagatatggtgaggagacagggaggttggaggttggggccggag 19014576  T
Q  109 tacttcatcttggtggaaggaagtagtgaagattagggatggg 151  Q
    |  ||| |||||||||| |||  ||||||||||||||||||||    
T  19014577 tgtttcttcttggtggagggagatagtgaagattagggatggg 19014619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 249
Target Start/End: Complemental strand, 5809192 - 5808987
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtacttcatcttggtggaaggaagtagtgaagatta 143  Q
    ||||||||||| || |||||| | ||||||| | |||  ||| |||||||||| |||| |||||||  |||||||| |||| ||||||||||||||||||    
T  5809192 tggtatagggttcttgtagcgcggtatggtgtgaaggttgggaggttggaggttgggggccggagtgtttcatcttagtggcaggaagtagtgaagatta 5809093  T
Q  144 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggcgtgtctacttacttttggtatgacaggtggct 243  Q
    |||||||| | ||||| |  || ||  ||||||| || ||| |||| |||| || ||||||   |||| |   ||| | |||||||||||||||||||||    
T  5809092 gggatggggtaggtgatgcagatggaggttggttcgcagagagggtgtcgaaaaaggtggggggtggcattagtacattcttttggtatgacaggtggct 5808993  T
Q  244 tggtga 249  Q
    ||||||    
T  5808992 tggtga 5808987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 52692106 - 52691922
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtag-gggccggagtacttcatctt 119  Q
    |||||||| |||||||| || || |||||||||||| |||| ||| | |||||||||||||| ||| |||||| ||||| ||| ||||||  ||| ||||    
T  52692106 atgttggtggatagagaggggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagagggtcggagtgattcttctt 52692007  T
Q  120 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtggg 204  Q
    |||||| |||  ||| |||||||| |||||| || || |||    | ||| |||||||||| ||| |||| |||| |||||||||    
T  52692006 ggtggagggagatagcgaagattaaggatggaataggagacacgaatgggggttggtttgcagagagggtgtcgaaaagggtggg 52691922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 13867330 - 13867567
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggcc-ggagtac 111  Q
    ||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| |||||||||||||| |||| | |||||      
T  13867330 gttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcaggagtgt 13867429  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    |||||| ||||||    || |||  ||||||||||||||| | || || |  |||||| | |||||||| ||| |||| ||||  |  || ||  ||||     
T  13867430 ttcatcgtggtggcgaaaaatagcaaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaagaaagtaggagatggt 13867529  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
         |||||||||||||||||||||||||||||||||    
T  13867530 tctagtacttacttttggtatgacaggtggcttggtga 13867567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 159
Target Start/End: Original strand, 40563063 - 40563202
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatctt 119  Q
    |||||||| |||||||| || || |||||||| ||  |||| ||||||||||| || ||||||| | ||||||||| | ||||||||| |  ||||||||    
T  40563063 atgttggtggatagagacgggttgtggtatagagttttggtggcgagatatggagatgaggcagagaggttggaggttgggggccggactgtttcatctt 40563162  T
Q  120 ggtggaaggaagtagtgaagattagggatgggatgggtga 159  Q
    ||||||  ||  ||| |||||||||||||||  |||||||    
T  40563163 ggtggagagagatagcgaagattagggatggagtgggtga 40563202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 45795824 - 45795710
Alignment:
Q  38 tggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggcc-ggagtacttcatcttggtggaaggaagtagtg 136  Q
    |||||| ||||||| ||| ||||||||  | |||||||||  ||  |||||||||||||| |||| | |||||  |||||||||||||  |||||||| |    
T  45795824 tggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggggcaggagtgtttcatcttggtggcgggaagtagcg 45795725  T
Q  137 aagattagggatggg 151  Q
    |||||||||||||||    
T  45795724 aagattagggatggg 45795710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 27393455 - 27393525
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttg 92  Q
    ||||||| |||||||  ||||| ||||||| |||| |||| || || |||||||||||||||||| |||||    
T  27393455 tgttggttgatagaggaggtttatggtatatggtgttggttgctaggtatggtgaggaggcagggaggttg 27393525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 129
Target Start/End: Complemental strand, 3074356 - 3074271
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtacttcatcttggtggaagga 129  Q
    |||||||||||| |||||||| | |||||||||||||  ||| |||||| ||| |||| |||||||  ||| || |||||||||||    
T  3074356 tggtatagggtgttggtagcgcgttatggtgaggaggatgggaggttggcggttggggaccggagtgtttcttcgtggtggaagga 3074271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 38070475 - 38070386
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    |||||||  ||||||| |||||||  || || |||||||| ||  |||| || || |||||||||||||| |||||||||||||| ||||    
T  38070475 gttggcggttgttggtggatagaggagggttgtggtatagagttttggtggcaaggtatggtgaggaggctgggcggttggaggttgggg 38070386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 45795918 - 45795829
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    ||||||| |||||||| |||| || |||||| ||||||| ||| ||||||||  | |||||||||  ||  |||||||||||||| ||||    
T  45795918 gttggcggatgttggtggataaaggtggtttatggtataaggtcctggtagcacggtatggtgagacggttgggcggttggaggttgggg 45795829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 45795644 - 45795612
Alignment:
Q  217 tacttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||| |||||    
T  45795644 tacttacttttggtatgacaggtggctaggtga 45795612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 14843634 - 14843871
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggc-cggagtac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||||||    
T  14843634 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggacggagtac 14843733  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14843734 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggc 14843833  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14843834 gtgtctacttacttttggtatgacaggtggcttggtga 14843871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 19350587 - 19350449
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| | |||||||||||      
T  19350587 gttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggccggagtgt 19350488  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
     ||||||||||||||||| |||| |||||||||||||||    
T  19350487 atcatcttggtggaaggaggtagcgaagattagggatgg 19350449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 153
Target Start/End: Complemental strand, 32186317 - 32186185
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttg 120  Q
    ||||||| ||||||| ||| ||||||||||||||| |||| ||||||||| |||||| ||| ||| ||||||||| | ||||||||||| |||| |||||    
T  32186317 tgttggtggatagaggtgggttttggtatagggtgttggtggcgagatatagtgaggtggctgggaggttggaggttgggggccggagtgcttcttcttg 32186218  T
Q  121 gtggaaggaagtagtgaagattagggatgggat 153  Q
    ||||| ||| |||||||||||||||||||||||    
T  32186217 gtggagggaggtagtgaagattagggatgggat 32186185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 29976505 - 29976650
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg--------taggggcc 104  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||        | ||||||    
T  29976505 gttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggaggttgggggttgggggcc 29976604  T
Q  105 ggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
    |||||   ||||||||||||||||| |||| |||||||||||||||    
T  29976605 ggagtgtatcatcttggtggaaggaggtagcgaagattagggatgg 29976650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 14686505 - 14686643
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggta-ggggccggagtac 111  Q
    ||||||| |||||||| |||||||  || |||||||||||||| ||||||||| | ||||| |||  ||  ||||||||||||||| |||||||||||      
T  14686505 gttggcggatgttggtggatagaggcggattttggtatagggtcctggtagcgcggtatggggagacggttgggcggttggaggtagggggccggagtgt 14686604  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
    ||||||||||||||  ||||||| |||||||||||||||    
T  14686605 ttcatcttggtggagagaagtagcgaagattagggatgg 14686643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 25350857 - 25350673
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggta-ggggccggagtacttcatctt 119  Q
    |||||||| ||||||||||| || |||||||||||| |||| ||| | |||||||||||||| ||| |||||| |||| |||||||||||  ||| | ||    
T  25350857 atgttggtggatagagatgggttctggtatagggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattcttttt 25350758  T
Q  120 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtggg 204  Q
    ||| || |||  ||| ||||||||||||||| || || |||   || ||| |||||||||| ||| |||| |||| |||||||||    
T  25350757 ggttgagggagatagcgaagattagggatggaataggagacacggatgggggttggtttgcagagagggtgtcgaaaagggtggg 25350673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 7956168 - 7956299
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtact 112  Q
    ||||||| ||||| || |||||||||||| |||||||| | ||| |||| || ||||||||||||||||  ||| |||||||||  | |||||||||  |    
T  7956168 gttggcgtatgttagttgatagagatggtctttggtatcgagtgttggtggctagatatggtgaggaggacgggaggttggaggatgaggccggagtggt 7956267  T
Q  113 tcatcttggtggaaggaagtagtgaagattag 144  Q
    || |  ||||||||| | || |||||||||||    
T  7956268 tctttatggtggaagaaggttgtgaagattag 7956299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 10362749 - 10362664
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggt-aggggccggagtacttcatcttggtgg 124  Q
    |||| |||||||||||  |||| |||||||||||||||||||  ||| ||||||||||  |||||||||||  ||| |||||||||    
T  10362749 gtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggtggggggccggagtggttcttcttggtgg 10362664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 26514355 - 26514226
Alignment:
Q  25 tggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtg 123  Q
    |||| |||||||| || || |||||||| ||| |||| ||  | |||||||||||||||||| | ||||||| | |||||||||||  |||   ||||||    
T  26514355 tggtggatagagaggggttctggtatagagtgttggtggctcggtatggtgaggaggcagggagtttggaggttgggggccggagtggttctatttggtg 26514256  T
Q  124 gaaggaagtagtgaagattagggatgggat 153  Q
    || |||  ||| ||||||||||||||||||    
T  26514255 gagggagatagcgaagattagggatgggat 26514226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 10919969 - 10920041
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttgg 93  Q
    |||||||| |||||||  || ||||||||||||||| |||| || || |||||||||||||| ||| ||||||    
T  10919969 atgttggttgatagaggggggttttggtatagggtgttggttgctaggtatggtgaggaggcggggaggttgg 10920041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 218 - 249
Target Start/End: Original strand, 14686711 - 14686742
Alignment:
Q  218 acttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||||||||    
T  14686711 acttacttttggtatgacaggtggcttggtga 14686742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 476856 - 476619
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  476856 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggaggttggaggtagggggccggagtac 476757  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||    
T  476756 ttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgacgctgaggggagttggtttgcggagcgggtttcgagaagggtaggtaatggc 476657  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  476656 gtgtctacttacttttggtatgacaggtggcttggtga 476619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 380544 - 380362
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||||| |||| | |||||||||||||||||| ||||||||| | |||||||||||      
T  380544 gttggcggatgttggtggatagagatggtttctggtatagggtgctggaagcgcggtatggtgaggaggcagggaggttggaggttgggggccggagtgg 380445  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcga 194  Q
    ||| ||||||| ||||||| |||||||||||||||| ||| | || || | ||||||| | |||||||||||| |||| ||||    
T  380444 ttcttcttggtagaaggaaatagtgaagattagggacgggttaggagaaggtgaggggggctggtttgcggagagggtgtcga 380362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 42259915 - 42259784
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggg-gccggagtacttcatctt 119  Q
    |||||||| ||||||| ||| |||||||||| |||| | || | ||||||| |||||| ||| ||| | |||||||| ||| |||||||| |||| ||||    
T  42259915 atgttggtggatagaggtgggttttggtataaggtgtttgtggagagatatcgtgaggtggctgggagtttggaggttgggagccggagtgcttcttctt 42259816  T
Q  120 ggtggaaggaagtagtgaagattagggatggg 151  Q
    |||||| ||| |||||||||||||||||||||    
T  42259815 ggtggagggaggtagtgaagattagggatggg 42259784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 32 - 151
Target Start/End: Original strand, 42039221 - 42039341
Alignment:
Q  32 tagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtggaaggaa 130  Q
    ||||| ||| ||||||||||||||| |||| |||| ||||||||||| ||  ||||||||||||| | ||||||||||| |||  |||||||||| |||     
T  42039221 tagaggtgggttttggtatagggtgttggtggcgaaatatggtgaggtggttgggcggttggaggatgggggccggagtgctttttcttggtggagggag 42039320  T
Q  131 gtagtgaagattagggatggg 151  Q
     || |||||||||||||||||    
T  42039321 ttaatgaagattagggatggg 42039341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 66 - 151
Target Start/End: Original strand, 22176376 - 22176462
Alignment:
Q  66 agatatggtgaggaggcagggcggttggaggtagggg-ccggagtacttcatcttggtggaaggaagtagtgaagattagggatggg 151  Q
    ||||||||||||||||||||| |||||| ||| |||| |||||||   || ||||||||||||||| ||| ||||||||||||||||    
T  22176376 agatatggtgaggaggcagggaggttggcggttgggggccggagtgtctcttcttggtggaaggaaatagcgaagattagggatggg 22176462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 15862194 - 15862263
Alignment:
Q  33 agagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    |||||||| ||||||||||||||| || | || || |||||||| ||||| |||||||||||||| ||||    
T  15862194 agagatgggttttggtatagggtgttgattgctaggtatggtgaagaggctgggcggttggaggttgggg 15862263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 22437851 - 22437810
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggta 62  Q
    ||||| ||||||||||||||||| |||||||||||| |||||    
T  22437851 atgttagtagatagagatggtttgtggtatagggtgttggta 22437810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 104
Target Start/End: Original strand, 4297833 - 4297897
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggcc 104  Q
    |||| |||||||||||| |||| ||||| |||||||||||||  ||| |||||| ||| ||||||    
T  4297833 gtttatggtatagggtgttggtggcgaggtatggtgaggaggatgggaggttggcggttggggcc 4297897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 34106 - 34343
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  34106 gttggcgaatgttggtagagagagatggtttttggtatagggtgctggtagcgagatatggtgaggagacagggaggttggaggtagggggccggagtac 34205  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||    
T  34206 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagaataggtaatggc 34305  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34306 gtgtctacttacttttggtatgacaggtggcttggtga 34343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 31675574 - 31675337
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  31675574 gttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccggagtac 31675475  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| ||||||||||||||| | ||| |||||||||    
T  31675474 ttcatcttggtggaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagcgggtttcgaggaaggtaggtaatggc 31675375  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
    | ||||||||||||||||||||| ||||||||||||||    
T  31675374 gcgtctacttacttttggtatgataggtggcttggtga 31675337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 31920848 - 31921085
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||| |||||||||    
T  31920848 gttggcgaatgttggtggatagaggtggtttttggtatagggtgctggtggtgagatatggtgaggaggcagggaggttggaggtagggggccggagtac 31920947  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggc 211  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||  ||||||||||||||||||| |||| |||||||||| | ||| |||||||||    
T  31920948 ttcatcttggtagaaggaagtagtgaagattagggacgggatgggtgtagatgaggggagttggtttgaggagtgggtttcgaggaaggtaggtaatggc 31921047  T
Q  212 gtgtctacttacttttggtatgacaggtggcttggtga 249  Q
    | ||||||||||||||||||||| ||||||||||||||    
T  31921048 gcgtctacttacttttggtatgataggtggcttggtga 31921085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 19875886 - 19875748
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| ||||||||||||||||||||| || ||||||||| | |||||||||||      
T  19875886 gttggcggttgttgatagatagaggtgggttttggtatagggtgttggtggcgagatatggtgaggaggcaaggaggttggaggttgggggccggagtgt 19875787  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
     ||||||||||||||||| |||| |||||||| ||||||    
T  19875786 atcatcttggtggaaggaggtagcgaagattaaggatgg 19875748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 25024349 - 25024430
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    ||||| || ||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||| ||| ||||    
T  25024349 atgttagtggatagagatggtttttggtatagggtgttggaagctagatatggtgaggaggcagggaggttggcggttgggg 25024430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 151
Target Start/End: Original strand, 40513221 - 40513360
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    ||||||| |||||||| ||||||| |||||| ||||||||||| ||||||||  | |||||||||  ||| ||||||||||||| | ||||| |||||      
T  40513221 gttggcggatgttggtggatagaggtggtttatggtatagggtcctggtagctcggtatggtgagacggctgggcggttggaggttgggggcaggagtgt 40513320  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatggg 151  Q
    |||| | ||||||  |||| |||  |||||||||||||||    
T  40513321 ttcaccgtggtggcgggaattagcaaagattagggatggg 40513360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 53941938 - 53941754
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggta-ggggccggagtacttcatctt 119  Q
    |||||||| |||||||| || || ||||||| |||| |||| ||| | |||||||||||||| ||| |||||| |||| |||||||||||  ||| | ||    
T  53941938 atgttggtggatagagaggggttctggtataaggtgttggtggcgcggtatggtgaggaggctgggaggttggtggtagggggccggagtgattcttttt 53941839  T
Q  120 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtggg 204  Q
     ||||| |||  ||| |||||||||||||||  | || |||   || ||| |||||||||| ||| |||| |||| |||||||||    
T  53941838 agtggagggagatagcgaagattagggatggagtaggagacacggatgggggttggtttgcagagagggtgtcgaaaagggtggg 53941754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 55367245 - 55367115
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggta-ggggccggagtacttcatctt 119  Q
    ||||| || ||||||| ||| || ||||||| |||  || |||||||||||||||||||||||| | ||||||||||| |||||||||||  ||| | ||    
T  55367245 atgttagttgatagaggtgggttgtggtataaggttttgttagcgagatatggtgaggaggcagagaggttggaggtagggggccggagtgattcctttt 55367146  T
Q  120 ggtggaaggaagtagtgaagattagggatgg 150  Q
    |||||| |||  ||  ||||||||| |||||    
T  55367145 ggtggatggagataacgaagattagagatgg 55367115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 52250648 - 52250733
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtgg 124  Q
    |||| |||||||||||| |||| |||||||||||||||||||  ||| ||||||||| | |||||||||||  ||| |||||||||    
T  52250648 gtttatggtatagggtgttggtggcgagatatggtgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 52250733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 102
Target Start/End: Complemental strand, 48930369 - 48930280
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    |||||||  |||||||||| ||  || |||| |||||||||||  |||| |||||||||||||||||||  ||| |||||||||| ||||    
T  48930369 gttggcggctgttggtagagaggaatagtttatggtatagggttttggtggcgagatatggtgaggaggatgggaggttggaggttgggg 48930280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 150
Target Start/End: Complemental strand, 14307801 - 14307713
Alignment:
Q  63 gcgagatatggtgaggaggcagggcggttggag-gtaggggccggagtacttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
    |||||||||||||||||||||||| | ||||||  | |||||||||||   ||| ||||||||| |||  ||| |||||||||||||||    
T  14307801 gcgagatatggtgaggaggcagggagattggagtttgggggccggagtgtgtcaccttggtggagggagatagcgaagattagggatgg 14307713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 34830036 - 34829904
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtact 112  Q
    ||||||| |||||||| |||| || ||| || ||||||||||| |||| |||| ||||||||||| | |  ||| |||||      ||| |||||||  |    
T  34830036 gttggcggatgttggtggatatagttgggttatggtatagggtactggcagcgcgatatggtgagaaagatgggaggttg------gggcccggagtgtt 34829943  T
Q  113 tcatcttggtggaaggaagtagtgaagattagggatggg 151  Q
    ||||||||||||   ||||||| ||||||||||||||||    
T  34829942 tcatcttggtggtgtgaagtagcgaagattagggatggg 34829904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 147
Target Start/End: Complemental strand, 46190135 - 46190000
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    |||||||  ||||||| |||| ||  ||||| ||||| |||||  |||| ||||| |||||||||||||| | ||||||||||| | |||||||||||      
T  46190135 gttggcggttgttggtggataaaggaggtttgtggtacagggtattggtggcgaggtatggtgaggaggctgagcggttggaggttgggggccggagtgt 46190036  T
Q  112 ttcatcttggtggaaggaagtagtgaagattaggga 147  Q
    |||   ||| |||| ||| |||| ||||||||||||    
T  46190035 ttctaattgatggagggaggtagcgaagattaggga 46190000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 18381701 - 18381564
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtact 112  Q
    ||||| |||||||||| |||||||  || || |||||| ||||  |||| |||||||||||||| ||||  ||  ||||||| ||||||| ||||||  |    
T  18381701 gttggagaatgttggttgatagaggagggttatggtattgggttttggtggcgagatatggtgacgaggatggaaggttggatgtagggggcggagtgtt 18381602  T
Q  113 tcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
    ||   |||||||| |||  ||| || ||||||||||||    
T  18381601 tctatttggtggagggagatagcgaggattagggatgg 18381564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 217 - 249
Target Start/End: Complemental strand, 34829857 - 34829825
Alignment:
Q  217 tacttacttttggtatgacaggtggcttggtga 249  Q
    ||||| |||||||||||||||||||||||||||    
T  34829857 tactttcttttggtatgacaggtggcttggtga 34829825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 150
Target Start/End: Original strand, 27218619 - 27218757
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    |||||||  ||||| ||||||||| ||| ||||||||||||||| |||| |||||||||||||||||||||||| |||||| || | |||||||||||      
T  27218619 gttggcggttgttgatagatagaggtggattttggtatagggtgttggtggcgagatatggtgaggaggcagggaggttggcggttgggggccggagtgt 27218718  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
     ||||||||||||||||| |||| |||||||||||||||    
T  27218719 atcatcttggtggaaggaggtagcgaagattagggatgg 27218757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 20349598 - 20349415
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtacttcatcttg 120  Q
    |||||||||||||||||  | || |||||||||||| |||| ||  | |||||||||||||||||| |||||||||||||||| |||||  |||   |||    
T  20349598 atgttggtagatagagaaaggttatggtatagggtgttggtggctcggtatggtgaggaggcagggaggttggaggtaggggcaggagtggttctctttg 20349499  T
Q  121 gtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtggg 204  Q
    ||||| |||  ||| |||||||||||||||||| || ||   ||||| | |||||||||| ||| |||| |||| || ||||||    
T  20349498 gtggagggagatagcgaagattagggatgggataggcgattctgaggagggttggtttgcagagagggtgtcgaaaaaggtggg 20349415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 19544899 - 19545034
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    ||||||| |||||||| ||||||||||| ||||||||||||||| |||   |  |||||||||||||||||| | ||||||||| | |||||||||||      
T  19544899 gttggcggatgttggtggatagagatgggttttggtatagggtgttggcgacacgatatggtgaggaggcagagaggttggaggttgggggccggagtgg 19544998  T
Q  112 ttcatcttggtggaaggaagtagtgaagattaggga 147  Q
    ||| |  |||||||||||  ||||||||||||||||    
T  19544999 ttctttgtggtggaaggatctagtgaagattaggga 19545034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 151
Target Start/End: Original strand, 17504064 - 17504195
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatctt 119  Q
    ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  ||| ||||||||| | |||||||||||  ||| |  |    
T  17504064 atgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctttgt 17504163  T
Q  120 ggtggaaggaagtagtgaagattagggatggg 151  Q
    |||||||||| ||  |||||||||| ||||||    
T  17504164 ggtggaaggaggttatgaagattagagatggg 17504195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 17549150 - 17549019
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatctt 119  Q
    ||||| || |||||||||||| |||||||| | ||| |||| |||||||| ||||||||||  ||| ||||||||| | |||||||||||  ||| |  |    
T  17549150 atgttagttgatagagatggtctttggtatcgagtgttggtggcgagatacggtgaggaggatgggaggttggaggatgggggccggagtggttctttgt 17549051  T
Q  120 ggtggaaggaagtagtgaagattagggatggg 151  Q
    |||||||||| ||  |||||||||| ||||||    
T  17549050 ggtggaaggaggttatgaagattagagatggg 17549019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 34104112 - 34103985
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatctt 119  Q
    |||||| | |||| ||| || ||||||||||||||| |||| ||| | || |||||||||||| || ||||||||| | ||||| |||||  ||| | ||    
T  34104112 atgttgatggataaagaggggttttggtatagggtgttggtggcgcgttacggtgaggaggcaaggaggttggaggatgggggctggagtggttcttgtt 34104013  T
Q  120 ggtggaaggaagtagtgaagattaggga 147  Q
    ||||||||||  ||||||||||||||||    
T  34104012 ggtggaaggatttagtgaagattaggga 34103985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 45 - 93
Target Start/End: Original strand, 8752925 - 8752973
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttgg 93  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||||||    
T  8752925 tggtatagggtgctggtggcgagatatggtgaggaggctgggaggttgg 8752973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 11341431 - 11341350
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    ||||||||  ||||| | || ||||||||||||||| |||  || || |||||||||||||||||| |||||||||| ||||    
T  11341431 atgttggtttatagatagggattttggtatagggtgttggctgctaggtatggtgaggaggcagggaggttggaggtcgggg 11341350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 102
Target Start/End: Original strand, 25018847 - 25018904
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    |||||||||||| |||| || ||||||||||||||||| ||| |||||||||| ||||    
T  25018847 tggtatagggtgttggtggcaagatatggtgaggaggctgggaggttggaggttgggg 25018904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 41805282 - 41805323
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggagg 81  Q
    ||||||||||||||||| |||| |||||||||||||||||||    
T  41805282 gtttttggtatagggtgttggtggcgagatatggtgaggagg 41805323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 23054476 - 23054548
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttgg 93  Q
    ||||| || |||||||  || ||||||||||||||| |||  || ||| ||||||||||||||||| ||||||    
T  23054476 atgttagttgatagaggagggttttggtatagggtgttggcggctagacatggtgaggaggcagggaggttgg 23054548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 6824054 - 6823916
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtac 111  Q
    ||||| |||||||||| |||||||  || || |||||||||||  |||  |||||||||| ||||||||||||| ||||||||| | |||||||||||      
T  6824054 gttggagaatgttggtggatagagcggggttctggtatagggttttggcggcgagatatgttgaggaggcagggaggttggaggttgggggccggagtgt 6823955  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
    |||| | ||||||||||| |||| |||||||||||||||    
T  6823954 ttcaccgtggtggaaggaggtagcgaagattagggatgg 6823916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 151
Target Start/End: Complemental strand, 11196994 - 11196855
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    ||||||||||| |||| |||||||  || || ||||||||||| ||||||||| | |||||||||   |  |||||||||||||| |||| |||||||      
T  11196994 gttggcgaatgatggtggatagaggcgggttatggtatagggttctggtagcgcggtatggtgagacagttgggcggttggaggttgggggccggagtgt 11196895  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatggg 151  Q
    |||||||||||||  ||||||||  |||||||||||||||    
T  11196894 ttcatcttggtggcgggaagtagctaagattagggatggg 11196855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 10689170 - 10689087
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtacttcatcttggtg 123  Q
    |||| |||||||||||| |||| | |||||||||||| |||||  || |||||||||| |||||||||||  ||| ||||||||    
T  10689170 gtttatggtatagggtgttggtggtgagatatggtgatgaggctaggaggttggaggttggggccggagtggttcttcttggtg 10689087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 124
Target Start/End: Complemental strand, 43310875 - 43310790
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtgg 124  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  ||| ||||||||| | |||||||||||  ||| |||||||||    
T  43310875 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggggccggagtggttcttcttggtgg 43310790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 102
Target Start/End: Complemental strand, 26146831 - 26146769
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    |||| |||||||||||| |||| ||||||||||| |||||||  ||| |||||||||| ||||    
T  26146831 gtttgtggtatagggtgttggtggcgagatatggcgaggaggatgggaggttggaggttgggg 26146769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 249
Target Start/End: Complemental strand, 2072151 - 2071946
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagatta 143  Q
    ||||||||||||||||| ||||||||||||||||||||| || |||| |||| | |||| ||||||  ||| |  ||||||| |||  ||||||||||||    
T  2072151 tggtatagggtgctggtggcgagatatggtgaggaggcaaggaggttagaggttgggggacggagtgtttcttgctggtggagggagttagtgaagatta 2072052  T
Q  144 gggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggcgtgtctacttacttttggtatgacaggtggct 243  Q
    |||| ||| | ||||| |  |||||| | |||||||| ||| |||| ||||||| ||| ||  ||||  |   |||||||||||||| |||||||||| |    
T  2072051 gggacggggtaggtgaggccgaggggggctggtttgcagagagggtgtcgagaaaggtaggggatggtttacatacttacttttggtctgacaggtgggt 2071952  T
Q  244 tggtga 249  Q
    ||||||    
T  2071951 tggtga 2071946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 43516253 - 43516482
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatctt 119  Q
    |||||||  ||||||| |||||| ||||||||||| || |||| | | |||||||||  ||| ||||||||||||| | ||||| |||||  ||||||||    
T  43516253 atgttggcggatagaggtggtttatggtatagggtcctagtagtgcggtatggtgagacggctgggcggttggaggttgggggcaggagtgtttcatctt 43516352  T
Q  120 ggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggcgtgtctac 219  Q
    |||||  |||||||| |||||||||||||||| | || || |  |||||| | |||||||| ||| |||| |||| ||  || ||  |||||     |||    
T  43516353 ggtggcgggaagtagcgaagattagggatggggtaggcgatgtagaggggggctggtttgcagagagggtgtcgaaaaaagtaggagatggctctagtac 43516452  T
Q  220 ttacttttggtatgacaggtggcttggtga 249  Q
    ||||||||||||||||| ||||||||||||    
T  43516453 ttacttttggtatgacaagtggcttggtga 43516482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 9691056 - 9690927
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttg 120  Q
    ||||||| ||||||  ||| ||||||||||||||||| ||||| ||||||||||||||||| ||| ||||||||| | |||||||||||  |||   |||    
T  9691056 tgttggtggatagatgtgggttttggtatagggtgctagtagctagatatggtgaggaggctgggaggttggaggttgggggccggagtgtttctcattg 9690957  T
Q  121 gtggaaggaagtagtgaagattagggatgg 150  Q
    ||||| |||  ||| |||||||||||||||    
T  9690956 gtggagggagatagcgaagattagggatgg 9690927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 52617407 - 52617497
Alignment:
Q  58 tggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagattaggga 147  Q
    |||| |||||||||||||||||||||| | ||||||||| ||| |||||||||  |||||||||||||| |||  ||| ||||||||||||    
T  52617407 tggtggcgagatatggtgaggaggcagagaggttggaggttagaggccggagtgtttcatcttggtggagggagatagcgaagattaggga 52617497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 147
Target Start/End: Original strand, 56337006 - 56337132
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttg 120  Q
    ||||||| |||||||  ||||| ||||||||||| || |  ||||| |||||||||||||| ||||||||||||| | |||| ||||||  |||  ||||    
T  56337006 tgttggtggatagagtaggtttgtggtatagggtactagcggcgaggtatggtgaggaggctgggcggttggaggttgggggtcggagtgtttctacttg 56337105  T
Q  121 gtggaaggaagtagtgaagattaggga 147  Q
    ||||| |||  ||| ||||||||||||    
T  56337106 gtggagggagatagcgaagattaggga 56337132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 147
Target Start/End: Complemental strand, 36183148 - 36183045
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagatta 143  Q
    ||||||||||| || || || ||||||||||||||||  ||||||||||||| | |||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  36183148 tggtatagggtacttgtggcaagatatggtgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 36183049  T
Q  144 ggga 147  Q
    ||||    
T  36183048 ggga 36183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 7099104 - 7098986
Alignment:
Q  34 gagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtggaaggaagt 132  Q
    |||| ||||| |||||| ||||  || |||| ||||||||||||||||  | | ||||||||| | |||||||||||  |||   |||||||||||| ||    
T  7099104 gagagggtttgtggtatcgggttttgatagctagatatggtgaggaggatgagaggttggaggatgggggccggagtggttctatttggtggaaggaggt 7099005  T
Q  133 agtgaagattagggatggg 151  Q
     ||||||||||||||||||    
T  7099004 tgtgaagattagggatggg 7098986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 38296322 - 38296284
Alignment:
Q  40 gtttttggtatagggtgctggtagcgagatatggtgagg 78  Q
    ||||||||||||||||| |||| ||||||||||||||||    
T  38296322 gtttttggtatagggtgttggtggcgagatatggtgagg 38296284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 183
Target Start/End: Original strand, 55725212 - 55725374
Alignment:
Q  22 tgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttg 120  Q
    |||| |||||||||||||| || |||||||||||| |||| || || ||||||| |||||  ||  | ||||||| | |||||||||||  ||| |||||    
T  55725212 tgttagtagatagagatggattatggtatagggtgttggtggctaggtatggtgtggaggatggtggtttggaggatgggggccggagttgttcttcttg 55725311  T
Q  121 gtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcgga 183  Q
    ||||| |||  |||| | ||| || |||||||| || || | || || | |||||||||||||    
T  55725312 gtggagggagatagtcatgatcagagatgggataggcgagggtggggagggttggtttgcgga 55725374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 6723 - 6593
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatctt 119  Q
    |||||||||||  |||  ||||| |||||||||||  | || |||||||||||||||||||||||| ||||||||| | ||||| ||||| ||||||| |    
T  6723 atgttggtagagcgaggcggtttgtggtatagggttttagtggcgagatatggtgaggaggcagggaggttggaggttgggggctggagtgcttcatcat 6624  T
Q  120 ggtggaaggaagtagtgaagattagggatgg 150  Q
    ||||||  || |||| |||||||||||||||    
T  6623 ggtggagagaggtagcgaagattagggatgg 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 21 - 153
Target Start/End: Complemental strand, 25193723 - 25193590
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggta-ggggccggagtacttcatctt 119  Q
    |||||||| ||||||||||| || |||||| ||||| |||| | | | |||||||||||||| ||| ||||||||||| |||||||||||  ||| | ||    
T  25193723 atgttggtggatagagatgggttctggtatcgggtgttggtggtgcggtatggtgaggaggctgggaggttggaggtagggggccggagtgattcttatt 25193624  T
Q  120 ggtggaaggaagtagtgaagattagggatgggat 153  Q
    |||||| |||  ||| ||||||||||||||||||    
T  25193623 ggtggagggagatagcgaagattagggatgggat 25193590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 6245725 - 6245497
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtact 112  Q
    ||||||| |||||||| ||||||| |||  | ||||||||||| || |||||  | ||||||||| |||| ||| ||||||      ||||||||||  |    
T  6245725 gttggcggatgttggtggatagaggtgggctctggtatagggttcttgtagcatgttatggtgagaaggctgggaggttgg------gggccggagtgtt 6245632  T
Q  113 tcatcttggtggaaggaagtagtgaagattagggatgggatgggtgacgatgaggggagttggtttgcggagcgggtttcgagaagggtgggtaatggcg 212  Q
    ||||||||||||  ||||||||||||||||||||||||| | ||||| |  || ||| |||||||  || || |||| |||| || ||||||  |||||     
T  6245631 tcatcttggtggcgggaagtagtgaagattagggatggggtaggtgatgcagatgggggttggtt--cgcagagggtgtcgaaaaaggtgggggatggca 6245534  T
Q  213 tgtctacttacttttggtatgacaggtggcttggtga 249  Q
        ||||| |||||||||||| ||||||||||||||    
T  6245533 ctagtactttcttttggtatgataggtggcttggtga 6245497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 15439752 - 15439632
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtacttcatcttg 120  Q
    ||||||||  ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||| |||||      ||||||||||   ||| | |||    
T  15439752 atgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggttg------ggggccggagcggttctttttg 15439659  T
Q  121 gtggaaggaagtagtgaagattaggga 147  Q
    |||||||||||||||||||||||||||    
T  15439658 gtggaaggaagtagtgaagattaggga 15439632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 15531056 - 15530936
Alignment:
Q  21 atgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggggccggagtacttcatcttg 120  Q
    ||||||||  ||||||||||||| |||||||||||| |||  |||   |||||||||||||||||| |||||      ||||||||||   ||| | |||    
T  15531056 atgttggtgaatagagatggtttatggtatagggtgttgggggcgcagtatggtgaggaggcagggaggttg------ggggccggagcggttctttttg 15530963  T
Q  121 gtggaaggaagtagtgaagattaggga 147  Q
    |||||||||||||||||||||||||||    
T  15530962 gtggaaggaagtagtgaagattaggga 15530936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 158
Target Start/End: Original strand, 29721439 - 29721553
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggta-ggggccggagtacttcatcttggtggaaggaagtagtgaagatta 143  Q
    |||||||||||  |||| |||||||||||||||||| | ||| ||||||||||| |||||||||||   || | |||||||| |||  ||| ||||||||    
T  29721439 tggtatagggttttggtggcgagatatggtgaggagcctgggaggttggaggtagggggccggagtgtctcttattggtggagggagatagcgaagatta 29721538  T
Q  144 gggatgggatgggtg 158  Q
    |||||||||| ||||    
T  29721539 gggatgggattggtg 29721553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 150
Target Start/End: Complemental strand, 36025164 - 36025026
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg-ccggagtac 111  Q
    ||||||| |||||||| |||||||  || || |||||||| ||  |||| |||||||||||||||||||| |||||||||||||| |||| |||||||      
T  36025164 gttggcggatgttggtggatagaggagggttatggtatagagttttggtggcgagatatggtgaggaggctgggcggttggaggttggggaccggagtgt 36025065  T
Q  112 ttcatcttggtggaaggaagtagtgaagattagggatgg 150  Q
    |||  ||| |||||  ||  ||| |||||||||||||||    
T  36025064 ttccactttgtggagagagttagcgaagattagggatgg 36025026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 147
Target Start/End: Original strand, 37165650 - 37165753
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggagg-taggggccggagtacttcatcttggtggaaggaagtagtgaagatta 143  Q
    ||||||||||| ||||| ||||||||||| |||||||  ||||||||||||| | |||||||||||  |||  ||||||||| |||  ||| ||||||||    
T  37165650 tggtatagggtactggtggcgagatatggcgaggaggatgggcggttggaggttgggggccggagtgtttctacttggtggagggagatagcgaagatta 37165749  T
Q  144 ggga 147  Q
    ||||    
T  37165750 ggga 37165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 18187789 - 18187709
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttgg 93  Q
    ||||| || |||| |||||||||| |||||| |||||||||| |||||| |   ||||||||||||||| |||||||||||    
T  18187789 gttggagattgttagtagatagaggtggtttgtggtatagggagctggttgattgatatggtgaggaggtagggcggttgg 18187709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 12341178 - 12341072
Alignment:
Q  45 tggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtaggg-gccggagtacttcatcttggtggaaggaagtagtgaagatta 143  Q
    |||| |||||| ||||| ||||| |||||||||||||| |||||||||||||| ||| ||||||||  |||   |||||||| | |  ||| ||||||||    
T  12341178 tggtttagggtactggtggcgaggtatggtgaggaggctgggcggttggaggttgggagccggagtgtttctaattggtggaggtagatagcgaagatta 12341079  T
Q  144 gggatgg 150  Q
    |||||||    
T  12341078 gggatgg 12341072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 12332461 - 12332423
Alignment:
Q  43 tttggtatagggtgctggtagcgagatatggtgaggagg 81  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  12332461 tttggtatagggtgttggtggcgagatatggtgaggagg 12332423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 93
Target Start/End: Original strand, 63824 - 63876
Alignment:
Q  41 tttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttgg 93  Q
    |||||||||||| ||| |||| |||||||||| ||||||||||||| ||||||    
T  63824 tttttggtatagagtgttggtggcgagatatgatgaggaggcagggaggttgg 63876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 4053 - 4095
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  4053 gttggcggatgttggtggatagagatggtttgtggtatagggt 4095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 134351 - 134393
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  134351 gttggcggatgttggtggatagagatggtttgtggtatagggt 134393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 312178 - 312220
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  312178 gttggcggatgttggtggatagagatggtttgtggtatagggt 312220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 327632 - 327674
Alignment:
Q  13 gttggcgaatgttggtagatagagatggtttttggtatagggt 55  Q
    ||||||| |||||||| |||||||||||||| |||||||||||    
T  327632 gttggcggatgttggtggatagagatggtttgtggtatagggt 327674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 67694 - 67634
Alignment:
Q  42 ttttggtatagggtgctggtagcgagatatggtgaggaggcagggcggttggaggtagggg 102  Q
    ||||||||||||||| || |  | || |||||||||||||||||| |||||||||| ||||    
T  67694 ttttggtatagggtgttgatttctaggtatggtgaggaggcagggaggttggaggttgggg 67634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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