View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_314 (Length: 249)

Name: NF7829A_low_314
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_314
NF7829A_low_314
[»] chr3 (5 HSPs)
chr3 (13-235)||(20554595-20554817)
chr3 (89-171)||(22127779-22127861)
chr3 (50-171)||(2735347-2735468)
chr3 (31-171)||(22510824-22510964)
chr3 (89-171)||(40924393-40924475)
[»] chr2 (4 HSPs)
chr2 (13-235)||(1196352-1196574)
chr2 (13-235)||(1286680-1286902)
chr2 (31-171)||(43524084-43524224)
chr2 (53-171)||(5087445-5087563)
[»] chr7 (5 HSPs)
chr7 (31-171)||(41595478-41595618)
chr7 (62-171)||(305456-305565)
chr7 (62-171)||(2828552-2828661)
chr7 (50-171)||(31420716-31420837)
chr7 (48-81)||(30051932-30051965)
[»] chr5 (3 HSPs)
chr5 (31-167)||(14008333-14008469)
chr5 (55-171)||(23122245-23122361)
chr5 (50-171)||(22271569-22271690)
[»] chr6 (2 HSPs)
chr6 (89-171)||(96019-96101)
chr6 (86-182)||(30386311-30386407)
[»] chr4 (2 HSPs)
chr4 (53-171)||(14798392-14798510)
chr4 (54-171)||(50413823-50413940)
[»] scaffold0005 (1 HSPs)
scaffold0005 (89-171)||(41218-41300)
[»] chr8 (1 HSPs)
chr8 (89-171)||(33362354-33362435)
[»] chr1 (2 HSPs)
chr1 (89-167)||(25535992-25536069)
chr1 (89-171)||(27132166-27132248)


Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 20554595 - 20554817
Alignment:
Q  13 atcatgaatagcgaaaaattctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgaga 112  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20554595 atcatgaatagcgaaaacttctctagacgcagcaaccaaagcaagttgtagtctatgtgcaaaacaatgaatataataagcataaggacaatctttgaga 20554694  T
Q  113 aataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttgcccgtggatatctgaaacatgaagaccatgcatagaaagaa 212  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20554695 aataatgcttgcaatccattccattatcccctcatattactagcaccatcatacccttgcccgcggatatctgaaacatgaagaccatgcatagaaagaa 20554794  T
Q  213 catcacaaccttcttttttaagt 235  Q
    |||||||| ||||||||||||||    
T  20554795 catcacaaacttcttttttaagt 20554817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 22127779 - 22127861
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttg 171  Q
    |||||||||||||||||||| | ||||| |||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  22127779 taagcataaggacaatctttcataaatagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttg 22127861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 2735468 - 2735347
Alignment:
Q  50 aaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatat 149  Q
    ||||||||||| || | ||| |||||||| || |  || |||||||||||||||||||| | ||| | |||||| || |||||||||||||| |||||||    
T  2735468 aaagcaagttgcaaccgatgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatat 2735369  T
Q  150 tactagcaccatcatacccttg 171  Q
    | |||||||| |||||||||||    
T  2735368 tgctagcaccgtcatacccttg 2735347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 22510824 - 22510964
Alignment:
Q  31 ttctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatcca 130  Q
    |||||| || |||| || ||| |||||||||||| | || ||||||||||| ||||| || |||||||||| ||| || | ||| |||||||| || ||     
T  22510824 ttctcttgatgcagtaaccaaggcaagttgtaatatgtgagcaaaacaatggatgtagtatgcataaggacgatccttcataaacaatgcttgtaaaccg 22510923  T
Q  131 ttccattctcccctcatattactagcaccatcatacccttg 171  Q
    ||||||||||| |||||||| || ||||||| |||||||||    
T  22510924 ttccattctcctctcatattgcttgcaccattatacccttg 22510964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 40924475 - 40924393
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttg 171  Q
    |||||||||||||||||||| | ||| | |||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  40924475 taagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttg 40924393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 1196352 - 1196574
Alignment:
Q  13 atcatgaatagcgaaaaattctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgaga 112  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||    
T  1196352 atcatgaatagcgaaaacttctctagacgcagcaaccaaagcaagttgtagtctatgtgcaaaacaatgaatgtaataatcataaggacaatctttaaga 1196451  T
Q  113 aataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttgcccgtggatatctgaaacatgaagaccatgcatagaaagaa 212  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  1196452 aataatgcttgcaatccattccattctcccctcgtattactagcaccatcatacccttgcctgcggatatctgaaacattaagaccatgcatagaaagaa 1196551  T
Q  213 catcacaaccttcttttttaagt 235  Q
    |||||||| ||||||||||||||    
T  1196552 catcacaaacttcttttttaagt 1196574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 13 - 235
Target Start/End: Original strand, 1286680 - 1286902
Alignment:
Q  13 atcatgaatagcgaaaaattctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgaga 112  Q
    ||||||||||||||||| |||||||||||||  || |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  1286680 atcatgaatagcgaaaacttctctagacgcaataaccaaagcaagttgtagtctatgtgcaaaacaatgaatgtaataatcataaggacaatcttcgaga 1286779  T
Q  113 aataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttgcccgtggatatctgaaacatgaagaccatgcatagaaagaa 212  Q
    |||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  1286780 aataatgcttgcaatccatttcattctccccttgtattactagcaccatcatacccttgcctgcggatatctgaaacattaagaccatgcatagaaagaa 1286879  T
Q  213 catcacaaccttcttttttaagt 235  Q
    |||||||| ||||||||||||||    
T  1286880 catcacaaacttcttttttaagt 1286902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 43524224 - 43524084
Alignment:
Q  31 ttctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatcca 130  Q
    |||||| || |||| || ||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || | ||| |||||||| || ||     
T  43524224 ttctcttgatgcagtaaccaaggcaagttgtaatctatgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccg 43524125  T
Q  131 ttccattctcccctcatattactagcaccatcatacccttg 171  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  43524124 ttccattctcctctcatattgcttgcaccatcatacccttg 43524084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 53 - 171
Target Start/End: Complemental strand, 5087563 - 5087445
Alignment:
Q  53 gcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattac 152  Q
    |||||||| || | ||| ||||||||||| |  || |||||||||||||||||||| | ||| | |||||| || | |||||||||||| |||||||| |    
T  5087563 gcaagttgcaaccgatgagcaaaacaatggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaacaattccattctcctctcatattgc 5087464  T
Q  153 tagcaccatcatacccttg 171  Q
    |||||||||||||||||||    
T  5087463 tagcaccatcatacccttg 5087445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 41595618 - 41595478
Alignment:
Q  31 ttctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatcca 130  Q
    |||||| || |||| || ||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || | ||| |||||||| || ||     
T  41595618 ttctcttgatgcagtaaccaaggcaagttgtaatctatgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccg 41595519  T
Q  131 ttccattctcccctcatattactagcaccatcatacccttg 171  Q
    ||||||||||| |||||||| || |||||||||||||||||    
T  41595518 ttccattctcctctcatattgcttgcaccatcatacccttg 41595478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 305456 - 305565
Alignment:
Q  62 aatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccat 161  Q
    |||||||| ||| ||||||| |  ||||||||||||||||||||| | ||||  || |||||||| ||||||||||| || | |||||||||||||||||    
T  305456 aatctatgagcataacaatgcacataataagcataaggacaatctctaagaatcaaagcttgcaagccattccattcaccgcgcatattactagcaccat 305555  T
Q  162 catacccttg 171  Q
    |||| |||||    
T  305556 catatccttg 305565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 2828661 - 2828552
Alignment:
Q  62 aatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccat 161  Q
    |||||||| ||| ||||||| |  ||||||||||||||||||||| | ||||  || |||||||| ||||||||||| || | |||||||||||||||||    
T  2828661 aatctatgagcataacaatgcacataataagcataaggacaatctctaagaatcaaagcttgcaagccattccattcaccgcgcatattactagcaccat 2828562  T
Q  162 catacccttg 171  Q
    |||| |||||    
T  2828561 catatccttg 2828552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 31420837 - 31420716
Alignment:
Q  50 aaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatat 149  Q
    ||||||||||| || | ||| |||||||| || |  || |||||||||||||||||||| | ||| | |||||| || |||||||||||||| |||||||    
T  31420837 aaagcaagttgcaaccgatgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatat 31420738  T
Q  150 tactagcaccatcatacccttg 171  Q
    | |||||||| |||||||||||    
T  31420737 tgctagcaccgtcatacccttg 31420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 30051965 - 30051932
Alignment:
Q  48 acaaagcaagttgtaatctatgtgcaaaacaatg 81  Q
    |||||||||||||||||||||||| |||||||||    
T  30051965 acaaagcaagttgtaatctatgtggaaaacaatg 30051932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 14008469 - 14008333
Alignment:
Q  31 ttctctagacgcagcaaacaaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatcca 130  Q
    |||||| || |||| || ||| ||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || | ||| |||||||| || ||     
T  14008469 ttctcttgatgcagtaaccaaggcaagttgtaatctatgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccg 14008370  T
Q  131 ttccattctcccctcatattactagcaccatcatacc 167  Q
    ||||||||||| |||||||| || |||||||||||||    
T  14008369 ttccattctcctctcatattgcttgcaccatcatacc 14008333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 171
Target Start/End: Original strand, 23122245 - 23122361
Alignment:
Q  55 aagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattacta 154  Q
    |||||||||||| || ||||||||||| ||||| || |||||||||||||| || | ||| |||||||| || || ||||||||||| |||||||| ||     
T  23122245 aagttgtaatctgtgagcaaaacaatggatgtagtatgcataaggacaatccttcataaacaatgcttgtaaaccgttccattctcctctcatattgctt 23122344  T
Q  155 gcaccatcatacccttg 171  Q
    |||||||||||||||||    
T  23122345 gcaccatcatacccttg 23122361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 22271569 - 22271690
Alignment:
Q  50 aaagcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatat 149  Q
    ||||||||||| || | ||| |||||||| || |  || |||||||||||||||||||| | ||| | |||||| || |||||||||||||| |||||||    
T  22271569 aaagcaagttgcaaccgatgagcaaaacagtggacatagtaagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatat 22271668  T
Q  150 tactagcaccatcatacccttg 171  Q
    | |||||||| |||||||||||    
T  22271669 tgctagcaccgtcatacccttg 22271690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 96101 - 96019
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttg 171  Q
    |||||||||||||||||||| | ||| | |||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  96101 taagcataaggacaatctttcataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttg 96019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 182
Target Start/End: Original strand, 30386311 - 30386407
Alignment:
Q  86 taataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttgcccgtggatat 182  Q
    ||||||||||||||||||||| | ||||  || |||||| | ||||||||||| || | ||||||||||||||||||||| ||||| || |||||||    
T  30386311 taataagcataaggacaatctctaagaatcaaagcttgctagccattccattcaccgcgcatattactagcaccatcatatccttgaccttggatat 30386407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 53 - 171
Target Start/End: Original strand, 14798392 - 14798510
Alignment:
Q  53 gcaagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattac 152  Q
    ||||||||||| | ||| |||||||| || |  || |||||||||||||||||||  | ||| | |||||| || |||||||||||||| |||||||| |    
T  14798392 gcaagttgtaaccgatgagcaaaacagtggacatagtaagcataaggacaatcttcaataaaaagtgcttgtaaaccattccattctcctctcatattgc 14798491  T
Q  153 tagcaccatcatacccttg 171  Q
    ||||||| |||||||||||    
T  14798492 tagcaccgtcatacccttg 14798510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 171
Target Start/End: Complemental strand, 50413940 - 50413823
Alignment:
Q  54 caagttgtaatctatgtgcaaaacaatgaatgtaataagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattact 153  Q
    |||||||||||||||| ||||||||||| ||||| ||  ||||||||||||| || | ||| |||||||   | |||||||||||||| ||| |||| ||    
T  50413940 caagttgtaatctatgagcaaaacaatggatgtagtatacataaggacaatccttaataaacaatgcttattaaccattccattctcctctcgtattgct 50413841  T
Q  154 agcaccatcatacccttg 171  Q
     | | ||||| |||||||    
T  50413840 tgtatcatcacacccttg 50413823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 41300 - 41218
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttg 171  Q
    |||||||||||||||||||  | ||| | |||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  41300 taagcataaggacaatcttaaataaaaagtgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttg 41218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 33362435 - 33362354
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttg 171  Q
    |||||||||||||||||||| | |||||  ||||| || |||||||||||||| |||||||| |||||||| |||||||||||    
T  33362435 taagcataaggacaatctttcataaatag-gcttgtaaaccattccattctcctctcatatttctagcaccgtcatacccttg 33362354  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 25536069 - 25535992
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacc 167  Q
    |||||||||||||||||||| ||||| | |||||| || |||||||||||||| |||||||||||| |||| |||||||    
T  25536069 taagcataaggacaatcttttagaaa-agtgcttgtaaaccattccattctcctctcatattactaacaccttcatacc 25535992  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 27132248 - 27132166
Alignment:
Q  89 taagcataaggacaatctttgagaaataatgcttgcaatccattccattctcccctcatattactagcaccatcatacccttg 171  Q
    ||||||||||||||||||||   ||| | || ||| || |||||||||||||| |||||||| | |||||| |||||||||||    
T  27132248 taagcataaggacaatctttcttaaaaattgtttgtaaaccattccattctcctctcatattgccagcaccgtcatacccttg 27132166  T

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