View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_319 (Length: 248)
Name: NF7829A_low_319
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_319 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 32813532 - 32813765
Alignment:
| Q |
1 |
gactatttggttctcattctgcttgtctagtttggaaagttaaggacacacaacatatatgggaataacaccaacagaagcattggtgaaagcatttaaa |
100 |
Q |
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| T |
32813532 |
gactattttgttctcattcttcttgtctagtgtggaaagttaaggacacacaacatatatgggaattacaccaacagaagcattggtgaaagcatttaaa |
32813631 |
T |
|
| Q |
101 |
gggtcatggtgaaataaatcatctaagaacatattgtcaaaaattatcagttcttcattgcaaataacaggatacagtcctcaaagaatcttctaatttc |
200 |
Q |
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| T |
32813632 |
gggtcatggtgaaataaatcatctaagaacatattgtcaaaaattatcagttcttcattgcaaataacaggatacagtcctcaaagaatcttctaatttc |
32813731 |
T |
|
| Q |
201 |
agcaagcctatgtggagggagctccttgatgtcc |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
32813732 |
agcaagcctatgtggagggagctccttgatgtcc |
32813765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 7987354 - 7987280
Alignment:
| Q |
159 |
tgcaaataacaggatacagtcctcaaagaatcttctaatttcagcaagcctatgtggagggagctccttgatgtc |
233 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||| | || ||||||||| ||||| |||||||| |
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| T |
7987354 |
tgcaaataacaggatacaatcctcaaagaatcttcttatttcagccaaccgatgtggaggaagctctttgatgtc |
7987280 |
T |
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