View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_32 (Length: 439)

Name: NF7829A_low_32
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_32
NF7829A_low_32
[»] chr1 (5 HSPs)
chr1 (1-427)||(16567156-16567582)
chr1 (126-191)||(50186075-50186140)
chr1 (126-209)||(43328454-43328536)
chr1 (171-205)||(303713-303747)
chr1 (124-194)||(33318826-33318895)
[»] chr8 (3 HSPs)
chr8 (131-196)||(16330973-16331038)
chr8 (126-187)||(11556955-11557016)
chr8 (148-192)||(5739600-5739644)
[»] chr4 (7 HSPs)
chr4 (128-205)||(32754601-32754678)
chr4 (128-215)||(22402372-22402459)
chr4 (124-195)||(49477690-49477761)
chr4 (169-205)||(52738952-52738988)
chr4 (148-191)||(27131680-27131723)
chr4 (126-204)||(30127669-30127746)
chr4 (130-202)||(40583973-40584045)
[»] chr6 (4 HSPs)
chr6 (112-194)||(8013842-8013924)
chr6 (152-205)||(32862750-32862803)
chr6 (148-191)||(2468480-2468523)
chr6 (165-198)||(34444749-34444782)
[»] chr2 (3 HSPs)
chr2 (125-198)||(30289796-30289869)
chr2 (131-189)||(37844191-37844249)
chr2 (146-191)||(17386484-17386529)
[»] chr7 (2 HSPs)
chr7 (130-215)||(14051172-14051257)
chr7 (130-215)||(14361201-14361286)
[»] chr5 (2 HSPs)
chr5 (148-193)||(29587689-29587734)
chr5 (159-195)||(38685302-38685338)


Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 16567156 - 16567582
Alignment:
Q  1 tcagtatttttggaattatgaaataaaagtgactgctttaaaaaactgagtgcatcaaatttgatttcgtgtgtacacaattctataaaacactgacaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16567156 tcagtatttttggaattatgaaataaaagtgactgctttaaaaaactgagtgcatcaaatttgatttcgtgtgtacacaattctataaaacactgacaca 16567255  T
Q  101 gttacggacctcaaacactatactgacactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgt 200  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16567256 gttacggacctcagacactatattgacactgacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgt 16567355  T
Q  201 gttggtgtcaaacaccggacacacctttgttctacagtgtctggtagtacttcatatatacacctttgttaagctttatatatgcagtaagattgaagat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16567356 gttggtgtcaaacaccggacacacctttgttctacagtgtctggtagtacttcatatatacacctttgttaagctttatatatgcagtaagattgaagat 16567455  T
Q  301 taatcaaactataaagaggcattgtattcccccttctcttttccccttttttctgataatcatggttaagccggtaagtttcatattgaagttaagtagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16567456 taatcaaactataaagaggcattgtattcccccttctcttttccccttttttctgataatcatggttaagccggtaagtttcatattgaagttaagtagc 16567555  T
Q  401 cactgaatacagctgttgattcatctc 427  Q
    |||||||||||||||||||||||||||    
T  16567556 cactgaatacagctgttgattcatctc 16567582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 50186140 - 50186075
Alignment:
Q  126 acactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgt 191  Q
    ||||| ||||||| |||| ||||||||||| ||||||| ||| ||||| |||||||| ||||||||    
T  50186140 acactaacatgtaaacacctgcaataattttacaaaatagaagtgatttaatgtaactacatgtgt 50186075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 209
Target Start/End: Original strand, 43328454 - 43328536
Alignment:
Q  126 acactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttggtgtc 209  Q
    ||||||||| || ||||| |  |||||||| | |||||| |||| ||| ||||||||||||||||||| | |||||||||||||    
T  43328454 acactgacacgttgacacttataataatttgagaaaatg-aaataatttaatgtaaccacatgtgtcattgtcgtgttggtgtc 43328536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 303713 - 303747
Alignment:
Q  171 attgaatgtaaccacatgtgtcagtatcgtgttgg 205  Q
    |||||||||||||||| ||||||||||||||||||    
T  303713 attgaatgtaaccacaagtgtcagtatcgtgttgg 303747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 33318826 - 33318895
Alignment:
Q  124 tgacactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcag 194  Q
    ||||||||| ||||||||||| | ||||| |||| ||||||  | ||||| ||||||||||||||||||||    
T  33318826 tgacactgatatgtagacaca-gtaataacttaagaaaatgagagtgattaaatgtaaccacatgtgtcag 33318895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 131 - 196
Target Start/End: Original strand, 16330973 - 16331038
Alignment:
Q  131 gacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagta 196  Q
    |||||||||||||  | |||||||||| |||||| |||||||| ||||||||||||||||||||||    
T  16330973 gacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacatgtgtcagta 16331038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 187
Target Start/End: Complemental strand, 11557016 - 11556955
Alignment:
Q  126 acactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacat 187  Q
    ||||| |||||||||||| || |||||||| | |||||  || |||||||||||||||||||    
T  11557016 acactaacatgtagacacctgtaataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 5739600 - 5739644
Alignment:
Q  148 aataatttaacaaaatggaaatgattgaatgtaaccacatgtgtc 192  Q
    |||||||| | |||||||||||||||||||||||  |||||||||    
T  5739600 aataatttgagaaaatggaaatgattgaatgtaagtacatgtgtc 5739644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 32754601 - 32754678
Alignment:
Q  128 actgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttgg 205  Q
    ||||||| |||||||| || |||| ||||| |||||| || ||||||||||||||||||  |||||||||| ||||||    
T  32754601 actgacacgtagacacttgtaatagtttaagaaaatgaaagtgattgaatgtaaccacacatgtcagtatcatgttgg 32754678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 128 - 215
Target Start/End: Original strand, 22402372 - 22402459
Alignment:
Q  128 actgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttggtgtcaaacac 215  Q
    ||||||||||||| ||  | ||||| || | ||||| ||| |||||||||||||||||||||||| || ||||||| |||||| ||||    
T  22402372 actgacatgtagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgttagtgtcagacac 22402459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 195
Target Start/End: Original strand, 49477690 - 49477761
Alignment:
Q  124 tgacactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagt 195  Q
    |||||||||||||||||||   | |||||||| | ||||||||| || |||||||||| |||||||||||||    
T  49477690 tgacactgacatgtagacatcgggaataatttgataaaatggaagtggttgaatgtaagcacatgtgtcagt 49477761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 205
Target Start/End: Complemental strand, 52738988 - 52738952
Alignment:
Q  169 tgattgaatgtaaccacatgtgtcagtatcgtgttgg 205  Q
    ||||||||||||||||||||||||||| |||||||||    
T  52738988 tgattgaatgtaaccacatgtgtcagtgtcgtgttgg 52738952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 27131723 - 27131680
Alignment:
Q  148 aataatttaacaaaatggaaatgattgaatgtaaccacatgtgt 191  Q
    |||||||||| ||||||||| | |||||||||||||||||||||    
T  27131723 aataatttaagaaaatggaagtaattgaatgtaaccacatgtgt 27131680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 30127746 - 30127669
Alignment:
Q  126 acactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttg 204  Q
    |||||||||| | ||||||||  ||| ||| | |||||| |||| ||||||||||||||||||||||| | ||||||||    
T  30127746 acactgacatatcgacacatgtgatagtttgagaaaatg-aaattattgaatgtaaccacatgtgtcaatgtcgtgttg 30127669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 202
Target Start/End: Complemental strand, 40584045 - 40583973
Alignment:
Q  130 tgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgt 202  Q
    |||||||| ||||| |  |||||||| | |||||  || ||||||||||||| ||||||||||||||| ||||    
T  40584045 tgacatgtggacacttataataattttaaaaaataaaagtgattgaatgtaaacacatgtgtcagtattgtgt 40583973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 8013924 - 8013842
Alignment:
Q  112 caaacactatactgacactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcag 194  Q
    ||||||| | ||||| ||| ||||||||||||  | |||||||| | |||||  || ||||||||||||||||||||||||||    
T  8013924 caaacacgacactgatactaacatgtagacactagtaataatttgaaaaaatataagtgattgaatgtaaccacatgtgtcag 8013842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 205
Target Start/End: Complemental strand, 32862803 - 32862750
Alignment:
Q  152 atttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttgg 205  Q
    |||||| |||||| || ||||||||||||||||| |||||||||||| ||||||    
T  32862803 atttaagaaaatgaaagtgattgaatgtaaccacgtgtgtcagtatcttgttgg 32862750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 191
Target Start/End: Complemental strand, 2468523 - 2468480
Alignment:
Q  148 aataatttaacaaaatggaaatgattgaatgtaaccacatgtgt 191  Q
    |||||||||| ||||||||| | |||||||||||||||||||||    
T  2468523 aataatttaagaaaatggaagtaattgaatgtaaccacatgtgt 2468480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 34444782 - 34444749
Alignment:
Q  165 gaaatgattgaatgtaaccacatgtgtcagtatc 198  Q
    |||||||||||||||||||||||||||| |||||    
T  34444782 gaaatgattgaatgtaaccacatgtgtctgtatc 34444749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 30289796 - 30289869
Alignment:
Q  125 gacactgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatc 198  Q
    |||||||||||||||||||  | |||||||||| ||||||  | | ||||||||||||||  ||||||||||||    
T  30289796 gacactgacatgtagacactggtaataatttaagaaaatgtgagtaattgaatgtaaccatgtgtgtcagtatc 30289869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Original strand, 37844191 - 37844249
Alignment:
Q  131 gacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgt 189  Q
    |||||||| ||||| | |||||||||| ||| || ||||||||| ||||||||||||||    
T  37844191 gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgt 37844249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 191
Target Start/End: Original strand, 17386484 - 17386529
Alignment:
Q  146 gcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgt 191  Q
    |||| ||||||  |||||||||||||||||||||||| ||||||||    
T  17386484 gcaacaatttatgaaaatggaaatgattgaatgtaactacatgtgt 17386529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 14051172 - 14051257
Alignment:
Q  130 tgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttggtgtcaaacac 215  Q
    |||||||||||||| | ||||||||| | ||||  ||  | ||| ||||||| |||||||||||| ||||||||  ||||||||||    
T  14051172 tgacatgtagacaccttcaataatttgagaaaacagatgtcattaaatgtaatcacatgtgtcaggatcgtgttaatgtcaaacac 14051257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 215
Target Start/End: Original strand, 14361201 - 14361286
Alignment:
Q  130 tgacatgtagacacatgcaataatttaacaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttggtgtcaaacac 215  Q
    |||||||||||||| | ||||||||| | ||||  ||  | ||| ||||||| |||||||||||| ||||||||  ||||||||||    
T  14361201 tgacatgtagacaccttcaataatttgagaaaacagatgtcattaaatgtaatcacatgtgtcaggatcgtgttaatgtcaaacac 14361286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 193
Target Start/End: Original strand, 29587689 - 29587734
Alignment:
Q  148 aataatttaacaaaatggaaatgattgaatgtaaccacatgtgtca 193  Q
    |||||||||| ||||||||| ||||| ||||||||||||| |||||    
T  29587689 aataatttaagaaaatggaagtgattaaatgtaaccacatatgtca 29587734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 38685338 - 38685302
Alignment:
Q  159 aaaatggaaatgattgaatgtaaccacatgtgtcagt 195  Q
    ||||||||| | |||||||||||||||||||||||||    
T  38685338 aaaatggaagtaattgaatgtaaccacatgtgtcagt 38685302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University