View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_320 (Length: 248)
Name: NF7829A_low_320
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_320 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 23377998 - 23378236
Alignment:
| Q |
10 |
atgagatcgaaatcattctacaatcattatgaagtaataaaaaataaagaaggttggggatgagagttttgtcgaatcaagtctttcattataaccaaga |
109 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23377998 |
atgagatcaaaatcattctacaatcattatgaagtaataaaa-ataaagaaggttggggatgagagttttgtcgaatcaagtctgtcattataaccaaga |
23378096 |
T |
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| Q |
110 |
gtagcaagacattaagcacattgattgacttctcaatgaacat-aaacatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcac |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23378097 |
gtaacaagacattaagcacattgattgacttctcaatgaatatgtttgatctcacaatccaattatgttcacccataagagtcaccaaatcctcatgcac |
23378196 |
T |
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| Q |
209 |
attttttcagtcctcactcttaaatcaccttaaaacccta |
248 |
Q |
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||||||||||||||| |||||||||||||| ||||||||| |
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| T |
23378197 |
attttttcagtcctcgctcttaaatcacctcaaaacccta |
23378236 |
T |
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