View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_322 (Length: 248)
Name: NF7829A_low_322
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_322 |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 34788333 - 34788112
Alignment:
| Q |
13 |
gatggacatcacttgtttaatctaaaaattaggactggattgacttgaa--------ttgggggagaaaaatgacacacaatccaaacaaggaccagaaa |
104 |
Q |
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| T |
34788333 |
gatggacatcacttgtttaatctaaaaattaggactggattgacttgaaagacattattgggggagaaaaatgacacacaatccaaacaaggaccataaa |
34788234 |
T |
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| Q |
105 |
tgcaaattaagcttgactattatttatttgataaaatcaaattcataaaatgaaaggaaaccataaaatacagttaagtagagatttcaactaatttgat |
204 |
Q |
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| T |
34788233 |
tgcaaattaagcctgactattatttatttgataaaatcaaattcataaaatgaaaggaaaccataaaatacatttaagtagagatttcaactaatttgat |
34788134 |
T |
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| Q |
205 |
aatggttgggtaattatatact |
226 |
Q |
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||||||||| |||||||||||| |
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| T |
34788133 |
aatggttggataattatatact |
34788112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 29875234 - 29875206
Alignment:
| Q |
220 |
atatactccctccattccttttcttttga |
248 |
Q |
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| T |
29875234 |
atatactccctccattccttttcttttga |
29875206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 42793598 - 42793570
Alignment:
| Q |
220 |
atatactccctccattccttttcttttga |
248 |
Q |
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| T |
42793598 |
atatactccctccattccttttcttttga |
42793570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 248
Target Start/End: Original strand, 41349366 - 41349396
Alignment:
| Q |
218 |
ttatatactccctccattccttttcttttga |
248 |
Q |
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| T |
41349366 |
ttatatactccctccattccttttcttttga |
41349396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 10112335 - 10112364
Alignment:
| Q |
219 |
tatatactccctccattccttttcttttga |
248 |
Q |
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| T |
10112335 |
tatatactccctccattccttttcttttga |
10112364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 219 - 248
Target Start/End: Complemental strand, 43041130 - 43041101
Alignment:
| Q |
219 |
tatatactccctccattccttttcttttga |
248 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
43041130 |
tatatactccctccattccttttcttttga |
43041101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 220 - 248
Target Start/End: Complemental strand, 27027691 - 27027663
Alignment:
| Q |
220 |
atatactccctccattccttttcttttga |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
27027691 |
atatactccctccattccttttcttttga |
27027663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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