View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_323 (Length: 248)

Name: NF7829A_low_323
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_323
NF7829A_low_323
[»] chr7 (5 HSPs)
chr7 (34-232)||(7699684-7699881)
chr7 (146-232)||(7727552-7727638)
chr7 (146-232)||(7739870-7739956)
chr7 (157-232)||(7731712-7731787)
chr7 (159-232)||(7714029-7714102)
[»] chr3 (1 HSPs)
chr3 (157-232)||(12907697-12907772)


Alignment Details
Target: chr7 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 7699881 - 7699684
Alignment:
Q  34 aattctataaatagccacactctgaaaatctatcttgtcacctaaacttgagtactcactcaagtctcaacccaaactcaaaccacctcttcttannnnn 133  Q
    ||||||||||||||  ||||||||||||||| |||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||         
T  7699881 aattctataaataggtacactctgaaaatctttcttgtcacccaaacgtgagtacacactcaagtctcaacccaaactcaaaccacctcttcttatttat 7699782  T
Q  134 nncaacttaaagaaaactccaagattaagatgaagacttctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttct 232  Q
       ||||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  7699781 ta-aacttaaggaaaactccaaaattaagatgaagacttctccaaacatgtttctcctactccacttaacacttctcttcctttcttccatctacttct 7699684  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 7727638 - 7727552
Alignment:
Q  146 aaaactccaagattaagatgaagacttctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttct 232  Q
    |||||||||| ||||||||||||||| |||||| || |||||||||||| ||| |||||||||||||||||||||||||||||||||    
T  7727638 aaaactccaaaattaagatgaagactcctccaaacaagtttctcctactccacttaacacttctcttcctttcttccatctacttct 7727552  T

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Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 232
Target Start/End: Complemental strand, 7739956 - 7739870
Alignment:
Q  146 aaaactccaagattaagatgaagacttctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttct 232  Q
    |||||||||| ||||||||||||||| |||||| || |||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  7739956 aaaactccaaaattaagatgaagactactccaaacaagtttctcctactccacttgacactcctcttcctttcttccatctacttct 7739870  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 7731787 - 7731712
Alignment:
Q  157 attaagatgaagacttctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttct 232  Q
    ||||||||||||||| |||||| ||||||||||||||| ||| | ||||| |||||||||||||||||||||||||    
T  7731787 attaagatgaagactactccaaacatgtttctcctactccacttgacactcctcttcctttcttccatctacttct 7731712  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 7714102 - 7714029
Alignment:
Q  159 taagatgaagacttctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttct 232  Q
    ||||||||||||| |||||| ||||||| | |||||   |||||||||  ||||||||||||||||||||||||    
T  7714102 taagatgaagactcctccaaacatgtttatgctactcagcctaacactcttcttcctttcttccatctacttct 7714029  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 232
Target Start/End: Original strand, 12907697 - 12907772
Alignment:
Q  157 attaagatgaagacttctccaaccatgtttctcctactgcacctaacacttctcttcctttcttccatctacttct 232  Q
    |||||||||||||||||||| | ||||||||| ||||| ||  |||||||  ||||||| |||| ||| |||||||    
T  12907697 attaagatgaagacttctcctaacatgtttcttctactccagttaacactcatcttcctctctttcatatacttct 12907772  T

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