View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_334 (Length: 247)
Name: NF7829A_low_334
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_334 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 8 - 241
Target Start/End: Original strand, 37766010 - 37766244
Alignment:
| Q |
8 |
gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctg-cgtggctattacagccaaa |
106 |
Q |
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| T |
37766010 |
gctggtcggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctggcgtggctattacagccaaa |
37766109 |
T |
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| Q |
107 |
gccgatgcttatagctacggaatgatgcttttcgaggttgtatcaggtaggagggactccgatccttcagaagatggtcaagttactttctttcctacct |
206 |
Q |
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| T |
37766110 |
gctgatgtttatagctacggaatgatgcttttcgaggttgtatcgggtaggaggaactccgatccatcagaagatggtcaagttactttctttcctacct |
37766209 |
T |
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| Q |
207 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
241 |
Q |
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| T |
37766210 |
tagctgcaaaagtagttatagaaggtggaagtgtc |
37766244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 224
Target Start/End: Complemental strand, 37799729 - 37799519
Alignment:
| Q |
15 |
ggacgagatttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttct-gcgtggctattacagccaaagccgatg |
113 |
Q |
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| T |
37799729 |
ggacgagatttcagaagaatccttacaaacatggaaggatcaagaggctatctttccccagagtggatatctagggctgctatcacagccaaatctgatg |
37799630 |
T |
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| Q |
114 |
cttatagctacggaatgatgcttttcgaggttgtatcaggtaggagggactccgatccttcagaagatggtcaagttactttctttcctaccttagctgc |
213 |
Q |
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| T |
37799629 |
tttacagttatggaatgatgctttttgaggttgtatcaggtaaaaggaattctgatccatctgcagatgaccaaaatactttctttccaaccttggctgc |
37799530 |
T |
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| Q |
214 |
aaaagtagtta |
224 |
Q |
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| T |
37799529 |
tacagtagtta |
37799519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 16214 - 16407
Alignment:
| Q |
24 |
ttcagcagggtcctaacaaccatgagaggaacaagaggctaccttgctccggagtggatttctgc-gtggctattacagccaaagccgatgcttatagct |
122 |
Q |
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| T |
16214 |
ttcagccgggtcctcactaccatgagaggaacaagaggctatctagctccagagtggatttcaggagttgctataaccgctaaagccgatgtttacagct |
16313 |
T |
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| Q |
123 |
acggaatgatgcttttcgaggttgtatcaggtaggagggactccgatccttcagaagatggtcaagttactttctttcctaccttagctgcaaa |
216 |
Q |
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| T |
16314 |
acggaatgatgcttttcgagctagtgtcaggtagaagaaactccgatccttctgaagatggccatgttagattctttcctaccttagctgcaaa |
16407 |
T |
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