View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_336 (Length: 247)
Name: NF7829A_low_336
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_336 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 12225 - 11996
Alignment:
| Q |
1 |
acaaacataaaatagaaagatgcacaagcttctttccctatcctatcatggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaat |
100 |
Q |
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| T |
12225 |
acaaacataaaatagaaagatgcacaagcttctttccctatcctatcatggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaat |
12126 |
T |
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| Q |
101 |
attccgggtttcataccaatgctcgaagcagctcctctatccgcggaactacaactaaacctggagcttatctggttaccttaataatcatggacaaaat |
200 |
Q |
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| T |
12125 |
attccgggtttcataccaatgctcgaagcagctcctctatccgcggaactacaactaaacctggagcttatctggttaccttaataatcatggacaaaat |
12026 |
T |
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| Q |
201 |
ctggtctgtatccaggcagtcggttttgat |
230 |
Q |
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| T |
12025 |
ctggtctgtatccaggcagtcggttttgat |
11996 |
T |
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Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 8 - 187
Target Start/End: Complemental strand, 16577047 - 16576868
Alignment:
| Q |
8 |
taaaatagaaagatgcacaagcttctttccctatcctatcatggactgaattccgggtgggtttctttaactcatcgcgatttcaaataaaatattccgg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||||||| ||| |
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| T |
16577047 |
taaaatagaaagatgcacaagcttctttccctatcctatcatggactgaatttcgggttgatttctttaactcatcacgatttcaaataaaatatttcgg |
16576948 |
T |
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| Q |
108 |
gtttcataccaatgctcgaagcagctcctctatccgcggaactacaactaaacctggagcttatctggttaccttaataa |
187 |
Q |
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| T |
16576947 |
gtttcataccaatactcgaagcaactcctctatccacgaaactacaactaaacctggagcttatctgataaccttaataa |
16576868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 148 - 230
Target Start/End: Original strand, 9628815 - 9628897
Alignment:
| Q |
148 |
actacaactaaacctggagcttatctggttaccttaataatcatggacaaaatctggtctgtatccaggcagtcggttttgat |
230 |
Q |
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| T |
9628815 |
actacaactaaacctggagcttatctagttaccttaataatcatggacaaaatctgctctatatctaggcagtcggttttgat |
9628897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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