View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_341 (Length: 246)

Name: NF7829A_low_341
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_341
NF7829A_low_341
[»] chr7 (2 HSPs)
chr7 (161-241)||(6703330-6703410)
chr7 (10-71)||(6703178-6703239)
[»] chr2 (1 HSPs)
chr2 (183-223)||(8731061-8731101)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 161 - 241
Target Start/End: Original strand, 6703330 - 6703410
Alignment:
Q  161 gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttattttgttggag 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  6703330 gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatatggttggag 6703410  T

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Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 71
Target Start/End: Original strand, 6703178 - 6703239
Alignment:
Q  10 atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6703178 atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa 6703239  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 8731061 - 8731101
Alignment:
Q  183 tttctaggacattttatcaagaatattatgatagagtacct 223  Q
    ||||||||| ||||||||||||||||  |||||||||||||    
T  8731061 tttctaggaaattttatcaagaatatcttgatagagtacct 8731101  T

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