View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_344 (Length: 246)
Name: NF7829A_low_344
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_344 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 16 - 197
Target Start/End: Complemental strand, 41382355 - 41382174
Alignment:
| Q |
16 |
gattatacttatcctttcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataat |
115 |
Q |
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| T |
41382355 |
gattatacttatcctttcatggatcatcactctctacaccctgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataat |
41382256 |
T |
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| Q |
116 |
gaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtaaaagttggggtgg |
197 |
Q |
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| T |
41382255 |
gaattgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtacaagttggggtgg |
41382174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 43853134 - 43853201
Alignment:
| Q |
32 |
tcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacg |
99 |
Q |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacg |
43853201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 8041735 - 8041900
Alignment:
| Q |
19 |
tatacttatcctttcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
118 |
Q |
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| T |
8041735 |
tatacttgtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
8041834 |
T |
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| Q |
119 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta |
184 |
Q |
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| T |
8041835 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta |
8041900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 7971953 - 7971788
Alignment:
| Q |
19 |
tatacttatcctttcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
118 |
Q |
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| T |
7971953 |
tatacttgttctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaaaacgtcttgatacatataatgaa |
7971854 |
T |
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| Q |
119 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta |
184 |
Q |
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| T |
7971853 |
ttagggcaacatgcttttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta |
7971788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 8031856 - 8032031
Alignment:
| Q |
19 |
tatacttatcctttcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
118 |
Q |
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| T |
8031856 |
tatacttctcttatcatggaccatcactctgtatacattgtggcaaatggttgagatgcatgaaatgattccgggaaaacgttttgatagataccatgaa |
8031955 |
T |
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| Q |
119 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtaaaagttgggg |
194 |
Q |
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| T |
8031956 |
ttaggtcaacatgcgtttggcgaaaagttaggcctttatattgtggttcctcaacaacttatagtagaagttgggg |
8032031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 29 - 184
Target Start/End: Complemental strand, 7979511 - 7979356
Alignment:
| Q |
29 |
ctttcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaac |
128 |
Q |
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| T |
7979511 |
ctttcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaac |
7979412 |
T |
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| Q |
129 |
atgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggta |
184 |
Q |
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| T |
7979411 |
atgcttttgggaaaaaattaggtctttatattgtggtgcctcaacaacttgtggta |
7979356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 3476 - 3299
Alignment:
| Q |
19 |
tatacttatcctttcatggatcataactctctacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaa |
118 |
Q |
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| T |
3476 |
tatacttatcttatcatggatcatcactctgtatacattgtggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaa |
3377 |
T |
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| Q |
119 |
ttgggccaacatgcgtttggtgaaaagttagggttgtggattgtgatgcctcaacaacttgtggtaaaagttggggtg |
196 |
Q |
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| T |
3376 |
ctgggacaacacgcgtttggcgaaaagttaggcctttatattgtggtgcctcaacaacttgtagtagaagttggggtg |
3299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 50 - 147
Target Start/End: Complemental strand, 14198887 - 14198790
Alignment:
| Q |
50 |
tacaccttgtggcaaatggttgagatgcatgagatggttccgggaaaacgtcttgatacatataatgaattgggccaacatgcgtttggtgaaaagtt |
147 |
Q |
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| T |
14198887 |
tacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagtt |
14198790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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