View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_345 (Length: 245)
Name: NF7829A_low_345
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_345 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 90 - 245
Target Start/End: Complemental strand, 2560850 - 2560695
Alignment:
| Q |
90 |
ttagagtatccatagtgtttctgatttatacaatattctttaccattnnnnnnntaacacattatacatagatttcatttatcttgccataagctttgta |
189 |
Q |
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| T |
2560850 |
ttagaatatccacagtgtttctgatttatacaatattctttaccattaaaaaaataacacattatacatagatttcatttatcttgccataagctttgta |
2560751 |
T |
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| Q |
190 |
cttgtagtttgtagtacacacgagtagacgatgcatcgcaatcacaatgaagtatt |
245 |
Q |
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| T |
2560750 |
cttgtagtttgtagtacacacgagtagacgatgcatcgcaatcacaatgaagtatt |
2560695 |
T |
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Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 98
Target Start/End: Complemental strand, 2561990 - 2561914
Alignment:
| Q |
22 |
acatttgtcgtcctttgttagcagtacttttatttcctttttatatcttgtgtatttcttgtaatggattagagtat |
98 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2561990 |
acatttgtcgtcctttgttagcagtacttttatttcctttttatatcttgtgtatttcttgtaatggattagagtat |
2561914 |
T |
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