View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_346 (Length: 245)
Name: NF7829A_low_346
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_346 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 7310255 - 7310019
Alignment:
| Q |
9 |
gatggacatcaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagag |
108 |
Q |
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| T |
7310255 |
gatgcacaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaa |
7310156 |
T |
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| Q |
109 |
tttcggaaacttgagaatggggaaaactctattatcaaattccatctttcccaagttaattacctcctttgtacagatctgattgttccaagtactacat |
208 |
Q |
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| T |
7310155 |
cttcggaaacttgagaaaggggaaaactttattatcaaattccatctttcccaagttaattacttcctttgttcagatctgattgttccaagcactacat |
7310056 |
T |
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| Q |
209 |
tttgtaacttgtgggcaggctataatcttgagaataa |
245 |
Q |
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| T |
7310055 |
tttgtaacttgttggcaggctataatcttgagaataa |
7310019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 142
Target Start/End: Original strand, 7329734 - 7329857
Alignment:
| Q |
18 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatgaattagaagagtttcggaaa |
117 |
Q |
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| T |
7329734 |
caatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgaactttggaaa |
7329832 |
T |
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| Q |
118 |
cttgagaatggggaaaactctatta |
142 |
Q |
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| T |
7329833 |
cttgagaatgaggaaaactctatta |
7329857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 7300897 - 7300843
Alignment:
| Q |
43 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatctgaaaatg |
97 |
Q |
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| T |
7300897 |
agtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaaatg |
7300843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 13898963 - 13899003
Alignment:
| Q |
57 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
97 |
Q |
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| T |
13898963 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
13899003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 13569143 - 13569182
Alignment:
| Q |
57 |
agttctgatttagggtcatgttactaatgcatctgaaaat |
96 |
Q |
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| T |
13569143 |
agttctgatttagggtcaagttactaatgcatatgaaaat |
13569182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 24552799 - 24552759
Alignment:
| Q |
57 |
agttctgatttagggtcatgttactaatgcatctgaaaatg |
97 |
Q |
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| T |
24552799 |
agttctgatttagggtcaagttactaatgcatatgaaaatg |
24552759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 23964003 - 23964039
Alignment:
| Q |
57 |
agttctgatttagggtcatgttactaatgcatctgaa |
93 |
Q |
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| T |
23964003 |
agttctgatttaggctcaagttactaatgcatctgaa |
23964039 |
T |
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