View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_347 (Length: 245)
Name: NF7829A_low_347
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_347 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 164
Target Start/End: Complemental strand, 44989871 - 44989747
Alignment:
| Q |
24 |
aagagaatgacagacatataatgaggtttcttggatagaccacagacagagttgcataccagatcaaaataaaacctagccgagcccaactgagactccc |
123 |
Q |
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| T |
44989871 |
aagagaatgacagacatataatgaggtttcttggatagaccagagacatagttgcataccagatc--aataa--------------taactgagactccc |
44989788 |
T |
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| Q |
124 |
taaagacacaaagtcctagagcaatctcaccgaatagcaaa |
164 |
Q |
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| T |
44989787 |
taaagacacaaagtcctagagcaatctcaccgaatagcaaa |
44989747 |
T |
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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 44989749 - 44989717
Alignment:
| Q |
205 |
aaaacaatatgactgacttaatttataagatat |
237 |
Q |
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| T |
44989749 |
aaaacaatatgactgacttaatttataagatat |
44989717 |
T |
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