View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_348 (Length: 245)
Name: NF7829A_low_348
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_348 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38990961 - 38991191
Alignment:
| Q |
1 |
aattccaccatacacttgaccaggactaccagagagggaaatgctaaaagaagaacaggcagggttggcaatgacttcagaaggaacattatcaacattg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38990961 |
aattccaccatacacttgaccatgactaccagagaggaaaatgctaaaagaagaacatgcagggttggcaatgacttcagaaggaacattatcaacattg |
38991060 |
T |
|
| Q |
101 |
ggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
38991061 |
ggattgacataagtgccagagagagacgtcatttggacaggtccttcaatagtgagtggtggggtatgagataacgagctgtgaatggtgatgtcagaga |
38991160 |
T |
|
| Q |
201 |
caataccagaacctctcagcactgtgatgtc |
231 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
|
|
| T |
38991161 |
caataccaaaacctctcagcactgtgatgtc |
38991191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 38954788 - 38954597
Alignment:
| Q |
27 |
taccagagagggaaatgctaaaagaagaacaggcagggttggcaatgacttcagaaggaacattatcaacattgggattgacataagtgccagagagaga |
126 |
Q |
| |
|
||||||| ||| ||||||||||||||||| | |||||||| |||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
38954788 |
taccagataggaaaatgctaaaagaagaatggttagggttggtgatgaattcagaaggaacagtatcagaattgggattgatgtaagtgccagagagaga |
38954689 |
T |
|
| Q |
127 |
cgtcatttggacaggtccttcaatagtgagtggtggggtatgggataacgagttgtgaatggtgatgtcagagacaataccagaacctctca |
218 |
Q |
| |
|
| |||||| || |||||||||||||| |||| |||| ||| ||| |||||| | ||||| || | |||||||| ||| |||||||||| |
|
|
| T |
38954688 |
catcattttgatgggtccttcaatagttagtgcaggggaatgagatgtcgagttacggatggtaatattagagacaagaccggaacctctca |
38954597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University