View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_352 (Length: 245)
Name: NF7829A_low_352
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_352 |
 | |
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| [»] chr2 (5 HSPs) |
| |
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| [»] chr3 (4 HSPs) |
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| [»] chr5 (5 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
| | |
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| [»] scaffold0524 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 32463300 - 32463065
Alignment:
| Q |
10 |
ggagttgggtcaacctgctactcagggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcatccacacatgattcttccaaactag |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
32463300 |
ggagttgggtcaacctgctacttagggtgtggaggcggaggcagaatacattagatggctttatctcgtctctcatccacacatgattcttccaaaccag |
32463201 |
T |
|
| Q |
110 |
gatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgg |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32463200 |
gatgttcaaatcccgaggccaccagagtaggaggccctttatgagattgcttctgaggaggatagaaagcaggggtacttggatctggccggaaggttgg |
32463101 |
T |
|
| Q |
210 |
gccgtattatcgaccatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
||||||| | ||||||||||||||||||||||||| |
|
|
| T |
32463100 |
gccgtatcagagaccatgtctatggtgtgatgtcca |
32463065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 83 - 245
Target Start/End: Original strand, 12753015 - 12753177
Alignment:
| Q |
83 |
catccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcagg |
182 |
Q |
| |
|
||||||||||||||||||||| |||||||||| | ||||| |||||||||||||||||||||||||||||||||| |||||||||| || || | | |
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|
| T |
12753015 |
catccacacatgattcttccactagaggatgttcaggttccgagaccaccagagcaggaggcccttgatgagattgctgatgaggaggatggagagtatg |
12753114 |
T |
|
| Q |
183 |
ggtacttggatctggccggaaggttgggccgtattatcgaccatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
|| ||||||||||| ||||||||| ||||||||| |||||||| |||| ||| ||||||| |
|
|
| T |
12753115 |
tgttcttggatctgggaggaaggttgagccgtattagagaccatgtatatgttgttatgtcca |
12753177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 245
Target Start/End: Original strand, 15343965 - 15344148
Alignment:
| Q |
62 |
agatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctg |
161 |
Q |
| |
|
||||||||||||| | |||| |||| || ||||||||||||| || ||||||| || ||| |||||||| |||||| ||||||||||||||||||| || |
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|
| T |
15343965 |
agatggttttatcccatctcacatcgacgcatgattcttccagacgaggatgtacaggtccagaggccactagagcaagaggcccttgatgagattgttg |
15344064 |
T |
|
| Q |
162 |
ctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcgaccatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
|||| ||||| || || | ||||||||||||||| ||||||||||| ||||| | || |||||||||| ||| ||||||| |
|
|
| T |
15344065 |
atgagcaggatggagagtaaaggtacttggatctgggtggaaggttgggtcgtataagagatcatgtctatgttgtcatgtcca |
15344148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 55 - 245
Target Start/End: Original strand, 32208694 - 32208883
Alignment:
| Q |
55 |
atacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgag |
154 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||| |||||||||||||||| |||| ||||| | ||||| |||||||| || |||| | |||||||| |
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|
| T |
32208694 |
atacatcagatggttttatctcgtctctcttccacgcatgattcttccaaaccaggaggttcaggtgccgagcccaccagatca-gaggtcgttgatgag |
32208792 |
T |
|
| Q |
155 |
attgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcgaccatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
|||| || | |||||||| || |||| |||| || || ||| ||||||||||||||||| | |||||| | |||| ||| ||||||| |
|
|
| T |
32208793 |
attgttgttaaggaggatggagagcatgggttctaagagttgggtggaaggttgggccgtatcagagaccatatatatgttgttatgtcca |
32208883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 25966644 - 25966744
Alignment:
| Q |
145 |
ccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcgaccatgtctatggtgtgatgtcc |
244 |
Q |
| |
|
|||||||||||||||||||||||||||| || | ||||||||||||||| || || ||||||| ||||||| | |||||||| |||| |||||||||| |
|
|
| T |
25966644 |
ccttgatgagattgctgctgaggaggatggagatcaggggtacttggatttgttcgaaaggttgagccgtatcagagaccatgtgtatgttgtgatgtcc |
25966743 |
T |
|
| Q |
245 |
a |
245 |
Q |
| |
|
| |
|
|
| T |
25966744 |
a |
25966744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 245
Target Start/End: Complemental strand, 54454375 - 54454142
Alignment:
| Q |
12 |
agttgggtcaacctgctactcagggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcatccacacatgattcttccaaactagga |
111 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||| | ||| | ||||||||||||||| |||||||||| || ||||||||||||| |||| |
|
|
| T |
54454375 |
agttggggcaacctgctattcagggtgtggaggcggacaatggctacttcagatggttttatctcatctctcatccgtgcaagattcttccaaaccagga |
54454276 |
T |
|
| Q |
112 |
tgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggc |
211 |
Q |
| |
|
|||||| |||||||||||| || || ||||||||||||||||||||| || ||||||||| || ||||||| |||||||| ||| | ||| | |||| | |
|
|
| T |
54454275 |
tgttcatatcccgaggccatcaaagtaggaggcccttgatgagattgttgttgaggaggacggagagcagggatacttggagctgacaggaggtttggac |
54454176 |
T |
|
| Q |
212 |
cgtattatcgaccatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
||||| | |||||||||| || ||||||||||| |
|
|
| T |
54454175 |
cgtatcagagaccatgtctgtgttgtgatgtcca |
54454142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 27990719 - 27990560
Alignment:
| Q |
33 |
agggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccacc |
132 |
Q |
| |
|
|||||||||||| ||| | | |||||| |||||||||||||||||||||||||||| |||||||||||||||| |||| |||| | ||||| ||||| |
|
|
| T |
27990719 |
agggtgtggaggtggaagagggatacatcagatggttttatctcgtctctcatccacgcatgattcttccaaaccaggaggttcgggtgccgagaccacc |
27990620 |
T |
|
| Q |
133 |
agagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttgga |
192 |
Q |
| |
|
||||| |||||||||||||||||||| || |||||||||| || |||| |||| |||||| |
|
|
| T |
27990619 |
agagcgggaggcccttgatgagattgttgttgaggaggatggagagcatgggttcttgga |
27990560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 26852334 - 26852252
Alignment:
| Q |
83 |
catccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctga |
165 |
Q |
| |
|
||||||||||| || |||| || |||||||||| ||||||||||| | ||| ||||||||||||||||||||| |||||| |
|
|
| T |
26852334 |
catccacacatcatagctccagacgaggatgttcatgtcccgaggccaactgagaaggaggcccttgatgagattgttgctga |
26852252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 171
Target Start/End: Complemental strand, 27703958 - 27703897
Alignment:
| Q |
110 |
gatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgaggagga |
171 |
Q |
| |
|
|||||||| ||||||||||| | ||| ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
27703958 |
gatgttcatatcccgaggcctgctgagtaggaggcccttgatgagattgttgctgagcagga |
27703897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 35 - 245
Target Start/End: Complemental strand, 43452199 - 43451990
Alignment:
| Q |
35 |
ggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccag |
134 |
Q |
| |
|
||||||||||| || | | |||||||| ||||||||||| ||||||||||||| |||||||||||||||| || | |||| | | ||||||||||| |
|
|
| T |
43452199 |
ggtgtggaggcagaagagggatacattaaatggttttatcaagtctctcatccacgcatgattcttccaaac-agaaggttccggtgctgaggccaccag |
43452101 |
T |
|
| Q |
135 |
agcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcgaccatgtctatgg |
234 |
Q |
| |
|
||| ||||||| ||||||||||||||| |||||||||| |||||| |||||||| || |||| ||||||||||||||||| | |||||||| |||| |
|
|
| T |
43452100 |
agcgggaggccattgatgagattgctgttgaggaggatgaaaagcatgggtacttagagctggggggaaggttgggccgtatcagagaccatgtgtatgt |
43452001 |
T |
|
| Q |
235 |
tgtgatgtcca |
245 |
Q |
| |
|
||| ||||||| |
|
|
| T |
43452000 |
tgttatgtcca |
43451990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 233
Target Start/End: Original strand, 5729381 - 5729546
Alignment:
| Q |
68 |
ttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgagg |
167 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| || |||||||||| |||| | ||||||||||||||| |||||||| ||||||| || || | |
|
|
| T |
5729381 |
ttttatctcttctcacatccacacatgattcttcaggacgaggatgttcaggtcccaaagccaccagagcaggatgcccttgaagagattgttgttgtgc |
5729480 |
T |
|
| Q |
168 |
aggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcgaccatgtctatg |
233 |
Q |
| |
|
||||| || ||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5729481 |
aggatggagagcaggggtacattgatctggccaaaaggttgggccgtattagagaccatgtctatg |
5729546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 29598908 - 29599084
Alignment:
| Q |
32 |
cagggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccac |
131 |
Q |
| |
|
||||||||||||||||| | | |||||| ||||| | |||| | ||| ||||||| |||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
29598908 |
cagggtgtggaggcggaagagggatacatcagatgatattataacacctcacatccacgtatgattcttccagtgcaggatgttcatgtcccgagaccac |
29599007 |
T |
|
| Q |
132 |
cagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttg |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| || |||| || ||||||||||| ||||||||| |
|
|
| T |
29599008 |
aagagcaggaggcccttgatgagactgctgctgaggaggatggagagcatatgttcttggatctgggaggaaggttg |
29599084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 17220698 - 17220575
Alignment:
| Q |
122 |
ccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcg |
221 |
Q |
| |
|
|||| |||||||||||| ||| | ||||||||||||||||| |||||||| || |||| |||| ||| || ||| |||||||||||||||||| | | |
|
|
| T |
17220698 |
ccgaagccaccagagcaagagatcattgatgagattgctgctcaggaggatggagagcatgggttcttagagttgggcggaaggttgggccgtatcagag |
17220599 |
T |
|
| Q |
222 |
accatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
||||| | |||| ||| ||||||| |
|
|
| T |
17220598 |
accatatgtatgttgttatgtcca |
17220575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 166
Target Start/End: Original strand, 25899589 - 25899617
Alignment:
| Q |
138 |
aggaggcccttgatgagattgctgctgag |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25899589 |
aggaggcccttgatgagattgctgctgag |
25899617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 55 - 185
Target Start/End: Original strand, 37340972 - 37341102
Alignment:
| Q |
55 |
atacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgag |
154 |
Q |
| |
|
|||||| | |||||||||||| ||||||||||||| |||| ||||||||||| | || ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
37340972 |
atacatcatatggttttatcttgtctctcatccacgcatgtttcttccaaaccaagaggttcaggtgtcgaggccaccagagcaggaggcccttgatgag |
37341071 |
T |
|
| Q |
155 |
attgctgctgaggaggatagaaagcaggggt |
185 |
Q |
| |
|
||| ||||||||||||| || |||| |||| |
|
|
| T |
37341072 |
attattgctgaggaggatggagagcatgggt |
37341102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 216
Target Start/End: Original strand, 99478 - 99640
Alignment:
| Q |
55 |
atacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgag |
154 |
Q |
| |
|
|||||| |||||||||||| || |||| ||||||| ||||||||||||| || |||||||||| |||| ||| | ||||||| | |||||||||||| |
|
|
| T |
99478 |
atacatcagatggttttatatcatctcacatccacgcatgattcttccagacgaggatgttcaggtcccaaggtcgtcagagcataatgcccttgatgag |
99577 |
T |
|
| Q |
155 |
attgctgctgaggaggatagaaagca-ggggtacttggatctggccggaaggttgggccgtat |
216 |
Q |
| |
|
|||| || |||| | ||| || |||| ||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
99578 |
attgttgttgagcaagatggagagcagggggtacttggatttggctggaaggttgggccgtat |
99640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 216
Target Start/End: Original strand, 30145904 - 30146042
Alignment:
| Q |
78 |
tctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaa |
177 |
Q |
| |
|
|||||||||||| |||||||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||||||||||||||||| || | |
|
|
| T |
30145904 |
tctctcatccacgcatgattcttccaaaccataaggttatggtttcgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatggaga |
30146003 |
T |
|
| Q |
178 |
gcaggggtacttggatctggccggaaggttgggccgtat |
216 |
Q |
| |
|
||| | || ||| || || | |||||||||||||||||| |
|
|
| T |
30146004 |
gcatgtgttcttagagctaggcggaaggttgggccgtat |
30146042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 32 - 188
Target Start/End: Complemental strand, 42458183 - 42458027
Alignment:
| Q |
32 |
cagggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccac |
131 |
Q |
| |
|
||||||||||||||||| | | | |||| ||||||||||||| |||||||||||| | ||||||||||||| |||||||||| | ||||||||| |
|
|
| T |
42458183 |
cagggtgtggaggcggaagagggacacatcagatggttttatcgcgtctctcatccgcgcatgattcttccactggaggatgttcaggtgtcgaggccac |
42458084 |
T |
|
| Q |
132 |
cagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtact |
188 |
Q |
| |
|
||||||| || ||||||||||| ||||| ||||||||||| || | |||||||||| |
|
|
| T |
42458083 |
tagagcagcagacccttgatgaggttgctactgaggaggatggagatcaggggtact |
42458027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 185
Target Start/End: Original strand, 902589 - 902710
Alignment:
| Q |
64 |
atggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgct |
163 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||| | || |||| | ||||||||||||||| ||||| | ||||||||||| ||||| |
|
|
| T |
902589 |
atggttttatgacgtctttcatccacacatgattcttccaaatcatgaggttccggtgtcgaggccaccagagcgggaggtcattgatgagatttctgct |
902688 |
T |
|
| Q |
164 |
gaggaggatagaaagcaggggt |
185 |
Q |
| |
|
|||||||| || |||| |||| |
|
|
| T |
902689 |
caggaggatggagagcatgggt |
902710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 65 - 163
Target Start/End: Original strand, 28245502 - 28245600
Alignment:
| Q |
65 |
tggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgct |
163 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| |||||| || ||| | |||||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
28245502 |
tggttttatgacatctctcatccacacatgattcttctaaactatgaggtttcggtgccgaggccaccagagcgggaggtcattgatgagattgctgct |
28245600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 28769991 - 28770108
Alignment:
| Q |
63 |
gatggttttatctcgtctctcatccacacatgattcttccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgc |
162 |
Q |
| |
|
||||||||||| | |||| ||||||| ||| || |||| |||| ||| |||||| ||||||||||||| ||| |||| |||||||||||||| ||||| |
|
|
| T |
28769991 |
gatggttttattccatctcacatccacgcatcatacttctaaacgaggttgttcatgtcccgaggccacccgagaaggatgcccttgatgagatcgctgc |
28770090 |
T |
|
| Q |
163 |
tgaggaggatagaaagca |
180 |
Q |
| |
|
|||| |||| ||||||| |
|
|
| T |
28770091 |
tgagcaggagggaaagca |
28770108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 233
Target Start/End: Complemental strand, 26614952 - 26614842
Alignment:
| Q |
123 |
cgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcga |
222 |
Q |
| |
|
||||||||| |||||| ||| ||||||||||| ||| ||||||| ||||| || ||||||||||||||| ||| ||| |||||||| ||||| | | |
|
|
| T |
26614952 |
cgaggccactagagcaagagacccttgatgaggttgttgctgagtaggatggagagcaggggtacttggtgctgaccgaaaggttggatcgtatcagagg |
26614853 |
T |
|
| Q |
223 |
ccatgtctatg |
233 |
Q |
| |
|
||||||||||| |
|
|
| T |
26614852 |
ccatgtctatg |
26614842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 20215361 - 20215238
Alignment:
| Q |
122 |
ccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcg |
221 |
Q |
| |
|
|||||||||||||||| |||| | | |||||||||||| | |||||||| || | || |||||||| || ||| || |||||||||| | || || | |
|
|
| T |
20215361 |
ccgaggccaccagagcgtgaggtcatggatgagattgcttgttaggaggatggagaccatgggtacttagagctgagcgtaaggttgggctgcatcatag |
20215262 |
T |
|
| Q |
222 |
accatgtctatggtgtgatgtcca |
245 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
20215261 |
accatgtgtatggtgtgatgtcca |
20215238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 14912478 - 14912538
Alignment:
| Q |
25 |
tgctactcagggtgtggaggcggaggcagaatacattagatggttttatctcgtctctcat |
85 |
Q |
| |
|
||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
14912478 |
tgctattcagggtgtggaggcgaaggcaggctacattagatggttttatctcatctctcat |
14912538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 17998589 - 17998509
Alignment:
| Q |
100 |
tccaaactaggatgttcaaatcccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagca |
180 |
Q |
| |
|
||||||| ||| |||||| ||||||||||||| ||| |||||||||||||||| || || |||||| |||| ||||||| |
|
|
| T |
17998589 |
tccaaacaaggttgttcatgtcccgaggccacccgagaaggaggcccttgatgaaatcgccgctgagtaggagggaaagca |
17998509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 14912538 - 14912591
Alignment:
| Q |
185 |
tacttggatctggccggaaggttgggccgtattatcgaccatgtctatggtgtg |
238 |
Q |
| |
|
||||||||||||| | |||||||||||||||| | ||||||||||||| |||| |
|
|
| T |
14912538 |
tacttggatctggtccgaaggttgggccgtatcaaagaccatgtctatgatgtg |
14912591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0524 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0524
Description:
Target: scaffold0524; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 243
Target Start/End: Complemental strand, 6198 - 6077
Alignment:
| Q |
122 |
ccgaggccaccagagcaggaggcccttgatgagattgctgctgaggaggatagaaagcaggggtacttggatctggccggaaggttgggccgtattatcg |
221 |
Q |
| |
|
|||||||||||||||| |||| | |||||| | ||||| |||||||||| || |||| |||||||| | || |||||||||| ||||||| | | |
|
|
| T |
6198 |
ccgaggccaccagagcgtgaggtcattgatgcgcgtgctgttgaggaggatggagagcatgggtacttataacttagcggaaggttgagccgtatcagtg |
6099 |
T |
|
| Q |
222 |
accatgtctatggtgtgatgtc |
243 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
6098 |
accatgtgtatgctgtgatgtc |
6077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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