View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_357 (Length: 244)
Name: NF7829A_low_357
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_357 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 12497 - 12258
Alignment:
| Q |
5 |
gagatggacatcatggatttcgcgagacataggcacaagcagtctaataagagtctgcggactccttagacaagagcataagcatagatcaggccatttc |
104 |
Q |
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| T |
12497 |
gagatgaacatcatggatttcgcgagacataggcacaagcagtctaataagagtctgcggactccttagacaagagcataagcatagatcaggccatttc |
12398 |
T |
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| Q |
105 |
ccaccacctcacgagcccaagtaaacgaaagtgtatgtgcactagcgggtgcggaaagcaagatattctcattatagccatatcccttctgaagggtttt |
204 |
Q |
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| T |
12397 |
ccaccacctcacgagcccaagtaaacgaaagtgtatgtgcactagcgggtgcggaaagcaagatattctcattatagccatatcccttatgaagggtttt |
12298 |
T |
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| Q |
205 |
aggagagccataggggcctatacaagtttccattaagaaa |
244 |
Q |
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| T |
12297 |
aggagagccataggggcctatacaagtttccattaagaaa |
12258 |
T |
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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 21805468 - 21805420
Alignment:
| Q |
12 |
acatcatggatttcgcgagacataggcacaagcagtctaataagagtct |
60 |
Q |
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| T |
21805468 |
acattatggatttcgcaagacataggcacaaacattctaataagagtct |
21805420 |
T |
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