View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_358 (Length: 244)

Name: NF7829A_low_358
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_358
NF7829A_low_358
[»] chr3 (11 HSPs)
chr3 (13-234)||(3472912-3473132)
chr3 (16-234)||(18539220-18539439)
chr3 (101-234)||(3586037-3586170)
chr3 (16-147)||(39728849-39728979)
chr3 (13-144)||(18694761-18694891)
chr3 (13-144)||(18710280-18710410)
chr3 (139-234)||(39728206-39728300)
chr3 (107-192)||(15778350-15778435)
chr3 (18-118)||(19595713-19595813)
chr3 (64-144)||(3289496-3289575)
chr3 (188-230)||(3475798-3475840)
[»] scaffold0281 (1 HSPs)
scaffold0281 (13-234)||(561-782)
[»] chr4 (13 HSPs)
chr4 (16-234)||(11150311-11150528)
chr4 (13-234)||(15703423-15703643)
chr4 (18-230)||(25127291-25127503)
chr4 (16-235)||(23972830-23973049)
chr4 (16-235)||(14644608-14644826)
chr4 (13-232)||(4529772-4529989)
chr4 (105-230)||(19612930-19613056)
chr4 (17-144)||(18875038-18875161)
chr4 (93-150)||(20770653-20770710)
chr4 (128-221)||(12385288-12385382)
chr4 (194-231)||(9565036-9565073)
chr4 (104-144)||(15691335-15691376)
chr4 (100-144)||(9609818-9609862)
[»] chr7 (12 HSPs)
chr7 (16-234)||(11509746-11509963)
chr7 (16-234)||(18148734-18148951)
chr7 (16-230)||(22530124-22530338)
chr7 (16-233)||(34705766-34705977)
chr7 (13-192)||(21860584-21860761)
chr7 (32-137)||(13694170-13694274)
chr7 (86-181)||(3377724-3377820)
chr7 (116-192)||(21501014-21501091)
chr7 (119-175)||(6019275-6019331)
chr7 (122-170)||(13386703-13386750)
chr7 (122-170)||(19193977-19194024)
chr7 (124-175)||(21498551-21498603)
[»] chr5 (7 HSPs)
chr5 (15-235)||(39437067-39437286)
chr5 (108-181)||(29497057-29497130)
chr5 (122-170)||(27273153-27273200)
chr5 (122-169)||(19049409-19049455)
chr5 (105-136)||(32039818-32039849)
chr5 (196-234)||(29497017-29497055)
chr5 (202-234)||(889872-889904)
[»] chr8 (8 HSPs)
chr8 (16-234)||(9882232-9882450)
chr8 (7-231)||(40387489-40387712)
chr8 (110-235)||(1216744-1216869)
chr8 (61-234)||(42145381-42145554)
chr8 (105-144)||(17289632-17289671)
chr8 (16-70)||(4860588-4860638)
chr8 (13-93)||(42145299-42145378)
chr8 (208-237)||(17289761-17289790)
[»] chr1 (10 HSPs)
chr1 (16-231)||(52272638-52272852)
chr1 (60-231)||(12785022-12785199)
chr1 (105-231)||(41138001-41138127)
chr1 (105-235)||(9132516-9132647)
chr1 (105-235)||(23633267-23633398)
chr1 (33-144)||(89878-89988)
chr1 (13-110)||(18514938-18515036)
chr1 (60-144)||(18249887-18249972)
chr1 (109-160)||(19474425-19474476)
chr1 (13-52)||(18249965-18250004)
[»] chr6 (10 HSPs)
chr6 (60-234)||(19770139-19770312)
chr6 (16-234)||(19891695-19891910)
chr6 (16-235)||(9547622-9547840)
chr6 (99-234)||(22468810-22468952)
chr6 (123-192)||(12876106-12876176)
chr6 (105-144)||(19565277-19565316)
chr6 (105-144)||(20738946-20738985)
chr6 (13-67)||(22468752-22468806)
chr6 (121-158)||(17729507-17729544)
chr6 (194-234)||(19565160-19565200)
[»] scaffold0005 (1 HSPs)
scaffold0005 (16-235)||(172466-172684)
[»] scaffold0024 (1 HSPs)
scaffold0024 (17-229)||(106674-106885)
[»] scaffold0323 (1 HSPs)
scaffold0323 (98-235)||(15300-15437)
[»] chr2 (12 HSPs)
chr2 (105-235)||(16092412-16092543)
chr2 (105-231)||(20264687-20264813)
chr2 (13-144)||(32625541-32625671)
chr2 (21-135)||(34892182-34892295)
chr2 (105-192)||(38991701-38991788)
chr2 (117-231)||(27401699-27401814)
chr2 (60-137)||(20178635-20178711)
chr2 (105-192)||(22385814-22385899)
chr2 (116-173)||(30613270-30613327)
chr2 (115-158)||(29890519-29890563)
chr2 (13-83)||(16092227-16092297)
chr2 (100-175)||(19467084-19467160)
[»] scaffold0498 (2 HSPs)
scaffold0498 (16-144)||(12012-12139)
scaffold0498 (140-230)||(9784-9875)
[»] scaffold0449 (1 HSPs)
scaffold0449 (150-234)||(344-429)
[»] scaffold0009 (1 HSPs)
scaffold0009 (85-144)||(221835-221894)
[»] scaffold0043 (2 HSPs)
scaffold0043 (105-177)||(66678-66752)
scaffold0043 (15-83)||(66953-67021)
[»] scaffold0196 (1 HSPs)
scaffold0196 (116-144)||(22871-22899)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 13 - 234
Target Start/End: Complemental strand, 3473132 - 3472912
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    ||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||||| |||||| |||||||| | |||||||| ||||||||    
T  3473132 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacatatcttc-aaatagacctacagttatgtatgcaatg 3473034  T
Q  113 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 212  Q
    || ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3473033 tctctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 3472934  T
Q  213 accatgaatgcatgaacaccaa 234  Q
    ||||||||||||||||||||||    
T  3472933 accatgaatgcatgaacaccaa 3472912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 18539439 - 18539220
Alignment:
Q  16 tcattgaatatcacatctttaaa-taattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 114  Q
    |||||||||||| |||||||||| || ||||| |||||||| ||| ||||||||||||||||||||||| ||||| || | |||||||| ||||||||||    
T  18539439 tcattgaatatcgcatctttaaaatagttacagatcttaaagtattacatcttttaattacacatcttc-aaatatacctacagttatgtatgcaatgtc 18539341  T
Q  115 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactga 213  Q
     ||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||| |||||||||||| ||||| |||||||||||||||    
T  18539340 tctaactcgactctatatgcatgtggtaccggttttggattttagagttatcttactgatttatctcccatctttaaatcacatatttaaatcggactga 18539241  T
Q  214 ccatgaatgcatgaacaccaa 234  Q
     ||||||||||||||||||||    
T  18539240 acatgaatgcatgaacaccaa 18539220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 101 - 234
Target Start/End: Original strand, 3586037 - 3586170
Alignment:
Q  101 atggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctt 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||||||||| ||| | ||||||||||||||||||    
T  3586037 atggatgcaatgtccctaactcgactctatatgcatgtagtaccgattttggatatcagagttatgttactgattaatctcgcatctttaaacacatctt 3586136  T
Q  201 taaatcggactgaccatgaatgcatgaacaccaa 234  Q
    ||||||||||||||||||||||||||||||||||    
T  3586137 taaatcggactgaccatgaatgcatgaacaccaa 3586170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 39728979 - 39728849
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||| |||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  39728979 tcattgaatatcacatctttaaatacgtacacatcttaaaatatcacttcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 39728881  T
Q  116 ctaactcgactctatatgcatgtggtaccggt 147  Q
    ||||||||||||||||||||||||||||||||    
T  39728880 ctaactcgactctatatgcatgtggtaccggt 39728849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 18694891 - 18694761
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18694891 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18694793  T
Q  113 tccctaactcgactctatatgcatgtggtacc 144  Q
    ||||||||||||||||||||||||||||||||    
T  18694792 tccctaactcgactctatatgcatgtggtacc 18694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 18710410 - 18710280
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    |||||||||||||||||||||||| ||| |||||  |||| || |  |||||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  18710410 acatcattgaatatcacatctttacatatttacatgtctttaaatcacacatcttttaattacacatcttt-aagtagacttgcagttatgtatgcaatg 18710312  T
Q  113 tccctaactcgactctatatgcatgtggtacc 144  Q
    ||||||||||||||||||||||||||||||||    
T  18710311 tccctaactcgactctatatgcatgtggtacc 18710280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 39728300 - 39728206
Alignment:
Q  139 ggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
    |||||||||||||||||||||| |||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39728300 ggtaccggttttggatatcagagttatga-actggtttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 39728206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 107 - 192
Target Start/End: Complemental strand, 15778435 - 15778350
Alignment:
Q  107 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 192  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||    
T  15778435 gcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcagagttatgttactgatttatcccccatctttaaa 15778350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 19595713 - 19595813
Alignment:
Q  18 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 117  Q
    |||||||||| |||||||||||| ||| |||| || || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  19595713 attgaatatcccatctttaaatagttatacatttttaaatatcacatcttttaattacacatcttcaaaatagacttgcagttatgtatgcaatgtccct 19595812  T
Q  118 a 118  Q
    |    
T  19595813 a 19595813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 3289496 - 3289575
Alignment:
Q  64 tcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||    
T  3289496 tctttaaatcacacatcttc-aaatagacttgtagttatgtatgcaatgtctctaactcgactctatatgcatgtggtacc 3289575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 230
Target Start/End: Original strand, 3475798 - 3475840
Alignment:
Q  188 ttaaacacatctttaaatcggactgaccatgaatgcatgaaca 230  Q
    ||||||||||||||||||||||||||||| |||||||||||||    
T  3475798 ttaaacacatctttaaatcggactgaccaagaatgcatgaaca 3475840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 561 - 782
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| |||||||| |||||||||| ||||||||    
T  561 acatcattgaatatcacatctttaaatatttacacatcttaaaatatcacatcttttaattatgcatcttc-aaatagacctgcagttatgtatgcaatg 659  T
Q  113 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggact 211  Q
    || |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  660 tctctaactcgactctatatgcatgtggtaccggttttggatatcagagatatgttactgatttatcccccatctttaaatcacatctttaaatcggact 759  T
Q  212 gaccatgaatgcatgaacaccaa 234  Q
    |||||||||||||||||||||||    
T  760 gaccatgaatgcatgaacaccaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 11150311 - 11150528
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||||||| ||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  11150311 tcattgaatatcacatatttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 11150409  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11150410 ctaactcgactctatatgcatgttgtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 11150509  T
Q  216 atgaatgcatgaacaccaa 234  Q
    |||||||||||||||||||    
T  11150510 atgaatgcatgaacaccaa 11150528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 15703423 - 15703643
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    ||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||    
T  15703423 acatcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatg 15703521  T
Q  113 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 212  Q
    || ||||||||||||||||| |||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15703522 tctctaactcgactctatatacatgtggtaccgattttagatatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactg 15703621  T
Q  213 accatgaatgcatgaacaccaa 234  Q
    ||||||||||||||||||||||    
T  15703622 accatgaatgcatgaacaccaa 15703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 25127503 - 25127291
Alignment:
Q  18 attgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccct 117  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||    
T  25127503 attgaatatcacatctttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctct 25127405  T
Q  118 aactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacca 216  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25127404 aactcgactcaatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaaatcggactgacca 25127305  T
Q  217 tgaatgcatgaaca 230  Q
    ||||||||||||||    
T  25127304 tgaatgcatgaaca 25127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 23972830 - 23973049
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||||||| |||||||||| |||||||| | |||||||| ||||||||||     
T  23972830 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaatcacacatcttc-aaatagacctacagttatgtatgcaatgtct 23972928  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 214  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  23972929 ctaactcgactctatatgcatgtggtaccagttttggatatcagagttatgttactgaattatcccccatctttaaatcacatctttaaatcggactgac 23973028  T
Q  215 catgaatgcatgaacaccaaa 235  Q
    |||||||||||||||||||||    
T  23973029 catgaatgcatgaacaccaaa 23973049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 14644608 - 14644826
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  14644608 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 14644706  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14644707 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 14644806  T
Q  216 atgaatgcatgaacaccaaa 235  Q
    ||||||||||||||||||||    
T  14644807 atgaatgcatgaacaccaaa 14644826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 4529772 - 4529989
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    |||||||||||||||||||||||||||| ||||| || || || || || ||  ||||||||||||||||| ||||||||||| ||||||| ||||||||    
T  4529772 acatcattgaatatcacatctttaaatagttacatatttttaaataacaaattatttaattacacatcttc-aaatagacttgtagttatgtatgcaatg 4529870  T
Q  113 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactg 212  Q
    || |||||||| |||||||||||||||||| |  ||||||||||||||  |||||||||||||||| ||||||||| || ||||| |||||||| |||||    
T  4529871 tctctaactcggctctatatgcatgtggtaacatttttggatatcagaggtatgttactgatttat-ccccatcttaaatcacatatttaaatcagactg 4529969  T
Q  213 accatgaatgcatgaacacc 232  Q
    |||||||||||||| |||||    
T  4529970 accatgaatgcatggacacc 4529989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 105 - 230
Target Start/End: Complemental strand, 19613056 - 19612930
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 203  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||| ||||||||||| |||||||||||    
T  19613056 atgcaatgtccctaactcgactctatatgcatgtggtactggtttcggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaa 19612957  T
Q  204 atcggactgaccatgaatgcatgaaca 230  Q
    |||||||||||||||||||||||||||    
T  19612956 atcggactgaccatgaatgcatgaaca 19612930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 18875038 - 18875161
Alignment:
Q  17 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 116  Q
    |||| |||||| |||||||||||| ||||||||||| ||  |  ||||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||||    
T  18875038 cattaaatatctcatctttaaatagttacacatctttaaaaagaacatcttttaattacacatattc-atatagacttgcaattatgtatgcaatgtccc 18875136  T
Q  117 taactcgactctatatgcatgtggtacc 144  Q
    |||||||| ||||||  |||||||||||    
T  18875137 taactcga-tctata--catgtggtacc 18875161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 150
Target Start/End: Original strand, 20770653 - 20770710
Alignment:
Q  93 ttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggtttt 150  Q
    ||||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||    
T  20770653 ttgcagttatgtatgcgatgtacctaactcgactctatatgcatgtggtaccagtttt 20770710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 221
Target Start/End: Complemental strand, 12385382 - 12385288
Alignment:
Q  128 tatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaat 221  Q
    |||||||||||||||    |||||||| || || | ||||||| || |||||||||||||| ||| |||||||| ||||  ||||||||||||||    
T  12385382 tatatgcatgtggtattaattttggatgtctgagtaatgttaccgagttatcccccatcttcaaatcacatcttcaaatgtgactgaccatgaat 12385288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 9565073 - 9565036
Alignment:
Q  194 acatctttaaatcggactgaccatgaatgcatgaacac 231  Q
    ||||| |||||| |||||||||||||||||||||||||    
T  9565073 acatcgttaaataggactgaccatgaatgcatgaacac 9565036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 15691335 - 15691376
Alignment:
Q  104 gatgcaatgtcccta-actcgactctatatgcatgtggtacc 144  Q
    ||||||||||||||| |||||||| |||||||||||||||||    
T  15691335 gatgcaatgtccctacactcgactatatatgcatgtggtacc 15691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 9609818 - 9609862
Alignment:
Q  100 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    |||| ||| ||||| ||||||| ||||||||||||||||||||||    
T  9609818 tatgtatggaatgtacctaacttgactctatatgcatgtggtacc 9609862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 11509963 - 11509746
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||||||||||||||||  ||||||||||||  ||||||||||||||||||||||||||| |||||| | | |||||||| ||||||||||     
T  11509963 tcattgaatatcacatctttaaataggtacacatcttaatatatcacatcttttaattacacatcttc-aaatagtcatacagttatgtatgcaatgtct 11509865  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11509864 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttattgatttatcccccatctttaaacacatctttaaatcggactgacc 11509765  T
Q  216 atgaatgcatgaacaccaa 234  Q
    |||||||||||||||||||    
T  11509764 atgaatgcatgaacaccaa 11509746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 18148951 - 18148734
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||| ||||||||||     
T  18148951 tcattgaatatcacatctttaaatatgtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtct 18148853  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    |||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18148852 ctaactcgactctatatgcatgtggtaccggttttgaatatctgagttatgttactgatttatcccccatctttaaacacatctttaaatcagactgacc 18148753  T
Q  216 atgaatgcatgaacaccaa 234  Q
    |||||||||||||||||||    
T  18148752 atgaatgcatgaacaccaa 18148734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 230
Target Start/End: Complemental strand, 22530338 - 22530124
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    ||||||||||| ||||||||||||| || ||||||||||| |||||| |||||||| ||||||||||| | |||||| | || ||||| ||||||||||     
T  22530338 tcattgaatattacatctttaaatagttgcacatcttaaaatatcacgtcttttaactacacatcttc-agatagacctacaattatgtatgcaatgtct 22530240  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  22530239 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccacatctttaaatcacatatttaaatcggactgac 22530140  T
Q  215 catgaatgcatgaaca 230  Q
    ||||||||| ||||||    
T  22530139 catgaatgcttgaaca 22530124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 34705766 - 34705977
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||| |||||||||||||||||| | ||||||| |||||| |||||||||||      |||||||||| |||||||| | |||||||| ||||||||||     
T  34705766 tcatcgaatatcacatctttaaacacttacacaacttaaaatatcacatctt------acacatcttc-aaatagacctacagttatgtatgcaatgtct 34705858  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 214  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||||||    
T  34705859 ctaactcaactctatctgcatgtggtaccggttttggatatcagagttatgttactgattaatcctccatctttaaatcacatctttaaatcggactgac 34705958  T
Q  215 catgaatgcatgaacacca 233  Q
    |||||||||||||||||||    
T  34705959 catgaatgcatgaacacca 34705977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 21860761 - 21860584
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatg 112  Q
    ||||||||||||||||| |||||||||| |||||||| || || ||  | |||||| |||||||||||||| ||||||||||||| ||||| ||||||||    
T  21860761 acatcattgaatatcacgtctttaaatagttacacatatttaaatagtatatctttaaattacacatcttc-aaatagacttgcaattatgtatgcaatg 21860663  T
Q  113 tccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 192  Q
    |||||||||||||| |||||| ||||| |||   ||||||||||||||  ||||||||||| ||||||||||||||||||    
T  21860662 tccctaactcgactatatatgaatgtgttactaattttggatatcagatgtatgttactga-ttatcccccatctttaaa 21860584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 32 - 137
Target Start/End: Original strand, 13694170 - 13694274
Alignment:
Q  32 ctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctata 131  Q
    |||||||||| |||||||||| || |  ||| ||||||||| |||||||||| |||||||||||||  |||| |||||||||||||||||||| ||||||    
T  13694170 ctttaaataaatacacatctttaaatgacacgtcttttaatcacacatcttc-aaatagacttgcaaatatgtatgcaatgtccctaactcgattctata 13694268  T
Q  132 tgcatg 137  Q
    ||||||    
T  13694269 tgcatg 13694274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 86 - 181
Target Start/End: Original strand, 3377724 - 3377820
Alignment:
Q  86 aatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccgg-ttttggatatcagaattatgttactgatttatccc 181  Q
    |||| |||||||| |||| ||||||||| ||||||||||||||||| ||| | |||||||| |||||||||||| | |||| ||| ||||| |||||    
T  3377724 aatacacttgcagatatgtatgcaatgtacctaactcgactctatacgcacgcggtaccggtttttggatatcatagttatattattgattaatccc 3377820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 21501091 - 21501014
Alignment:
Q  116 ctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatttatcccccatctttaaa 192  Q
    |||| ||||||||||||||||||||||||  ||||| ||| || || ||||||||| |||| ||||  ||||||||||    
T  21501091 ctaattcgactctatatgcatgtggtaccaagttttagatgtcggagttatgttaccgattgatccttcatctttaaa 21501014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 6019331 - 6019275
Alignment:
Q  119 actcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatt 175  Q
    |||||| |||||||||||||||||||  |||||||| || || ||||||||| ||||    
T  6019331 actcgattctatatgcatgtggtaccatttttggatgtcggagttatgttaccgatt 6019275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 13386703 - 13386750
Alignment:
Q  122 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 170  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||||    
T  13386703 cgactttatatgcttgtggtaccg-ttttggatatcagagttatgttac 13386750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 19194024 - 19193977
Alignment:
Q  122 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 170  Q
    |||||||||| ||||||||||||  |||||||||||||| |||||||||    
T  19194024 cgactctatacgcatgtggtacca-ttttggatatcagagttatgttac 19193977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 21498551 - 21498603
Alignment:
Q  124 actctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 175  Q
    |||||||||||| |||||||| |||||| ||| ||||| ||||||||||||||    
T  21498551 actctatatgcacgtggtaccaggttttagatgtcagagttatgttactgatt 21498603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 161; Significance: 6e-86; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 39437286 - 39437067
Alignment:
Q  15 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtc 114  Q
    |||||||||||||  ||||||||||| |||||||| ||||| ||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||    
T  39437286 atcattgaatatcgtatctttaaatagttacacattttaaaatatcacatcttttaattacacatcttc-aaatagacatgcagttatgtatgcaatgtc 39437188  T
Q  115 cctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgac 214  Q
     ||||||||||| ||||||||||||||||||||||||||||| ||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39437187 tctaactcgactttatatgcatgtggtaccggttttggatattagagttatattactgatttatcccacatctttaaacacatctttaaatcggactgac 39437088  T
Q  215 catgaatgcatgaacaccaaa 235  Q
    |||||||||||||||||||||    
T  39437087 catgaatgcatgaacaccaaa 39437067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 181
Target Start/End: Complemental strand, 29497130 - 29497057
Alignment:
Q  108 caatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatccc 181  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||| ||||||||  |||||||||||||||||||    
T  29497130 caatgtcgctaactcgactatatatgcatgtggtaccagttttgtatatcagaggtatgttactgatttatccc 29497057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 27273153 - 27273200
Alignment:
Q  122 cgactctatatgcatgtggtaccggttttggatatcagaattatgttac 170  Q
    ||||||||||||||||||||||| |||||||||||| || |||||||||    
T  27273153 cgactctatatgcatgtggtacc-gttttggatatcggagttatgttac 27273200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 19049409 - 19049455
Alignment:
Q  122 cgactctatatgcatgtggtaccggttttggatatcagaattatgtta 169  Q
    ||||||||||||||||||||||| |||||||||||| || ||||||||    
T  19049409 cgactctatatgcatgtggtacc-gttttggatatcggagttatgtta 19049455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 136
Target Start/End: Original strand, 32039818 - 32039849
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcat 136  Q
    ||||||||||||||||||||||||||||||||    
T  32039818 atgcaatgtccctaactcgactctatatgcat 32039849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 29497055 - 29497017
Alignment:
Q  196 atctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  29497055 atctttaaattagactgaccatgaatgcatgaacaccaa 29497017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 889904 - 889872
Alignment:
Q  202 aaatcggactgaccatgaatgcatgaacaccaa 234  Q
    |||| ||||||||||||||||||||||||||||    
T  889904 aaataggactgaccatgaatgcatgaacaccaa 889872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 9882232 - 9882450
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    ||||||||||||||||||||||| | ||| |||||||||| ||||||||| ||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9882232 tcattgaatatcacatctttaaacacttaaacatcttaaaatatcacatcatttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9882330  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  9882331 ctaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgattaatcccccatctttaaatcacatctttaaatcggactgac 9882430  T
Q  215 catgaatgcatgaacaccaa 234  Q
    ||||||||||||||||||||    
T  9882431 catgaatgcatgaacaccaa 9882450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 40387489 - 40387712
Alignment:
Q  7 agatggacatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggat 106  Q
    ||||| || ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||| | |||||||| ||    
T  40387489 agatgcacgtcattgaatatcacatctttaaatagttacacatcttaaattatcagatcttttaattacacatcttc-aaatagacctacagttatgtat 40387587  T
Q  107 gcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaat 205  Q
    |||||||  ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  40387588 gcaatgtttctaactcgactctatatgcatgtggtaccagttttggatattagagttatgttactgatttat-ccccatctttaaatcacatctttaaat 40387686  T
Q  206 cggactgaccatgaatgcatgaacac 231  Q
    |||||| |||||||||||||||||||    
T  40387687 cggacttaccatgaatgcatgaacac 40387712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 110 - 235
Target Start/End: Original strand, 1216744 - 1216869
Alignment:
Q  110 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcgga 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||    
T  1216744 atgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatcttattgatttatcccccatctttaaacacatgtttaaatcgga 1216843  T
Q  210 ctgaccatgaatgcatgaacaccaaa 235  Q
    || |||||||||||||||||||||||    
T  1216844 ctaaccatgaatgcatgaacaccaaa 1216869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 61 - 234
Target Start/End: Original strand, 42145381 - 42145554
Alignment:
Q  61 acatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 160  Q
    |||||||||||| |||||| ||| ||||||| ||| ||||||  ||||||||||||||||||||||||||||||||||||||| | |||||||||||| |    
T  42145381 acatcttttaatcacacatattc-aaatagatttgtagttatatatgcaatgtccctaactcgactctatatgcatgtggtactgattttggatatcaaa 42145479  T
Q  161 attatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
      ||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| |||||||||||||||||    
T  42145480 ggtatgttactgatttatctcccatctttaaatcacatcattaaatcggactgaccaagaatgcatgaacaccaa 42145554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 105 - 144
Target Start/End: Original strand, 17289632 - 17289671
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  17289632 atgcaatgtccctaactcgactctatatgcatgtggtacc 17289671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 4860638 - 4860588
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatctttta 70  Q
    |||||||||||||||||||||||    ||||||||||||| ||||||||||||||    
T  4860638 tcattgaatatcacatctttaaa----tacacatcttaaaatatcacatctttta 4860588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 93
Target Start/End: Original strand, 42145299 - 42145378
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagact 93  Q
    ||||||| || |||||| |||||||||| |||||||||||  | || |||| |||||||| |||||||||| |||||||||    
T  42145299 acatcatcgagtatcacgtctttaaatatttacacatctttgaataacacaacttttaatcacacatcttc-aaatagact 42145378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 17289761 - 17289790
Alignment:
Q  208 gactgaccatgaatgcatgaacaccaaact 237  Q
    ||||||||||||||||||||||||||||||    
T  17289761 gactgaccatgaatgcatgaacaccaaact 17289790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 231
Target Start/End: Original strand, 52272638 - 52272852
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| || ||||||||||     
T  52272638 tcattgaatatcgcatctttaaatatttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagaactgcagttgtgtatgcaatgtct 52272736  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    ||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  52272737 ctaactcgactctatatgcatgtggtatcggttttggatatcatagttatgttactgatttatcccacatctttaaacacatctttaaatcggactgacc 52272836  T
Q  216 atgaatgcatgaacac 231  Q
    ||||||||||||||||    
T  52272837 atgaatgcatgaacac 52272852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 60 - 231
Target Start/End: Original strand, 12785022 - 12785199
Alignment:
Q  60 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 159  Q
    |||||||||||||||||||||||| |||||||| | || ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12785022 cacatcttttaattacacatcttc-aaatagacctacaattatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 12785120  T
Q  160 aa-------ttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 231  Q
    |        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12785121 atatcagagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacac 12785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 41138127 - 41138001
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 204  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41138127 atgcaatgtccttaacttgactctatatgcatgtggtaccagttttggatatcagagttatgttactgatttatcccccatctttaaacacatctttaaa 41138028  T
Q  205 tcggactgaccatgaatgcatgaacac 231  Q
    |||||||||||||||||||||||||||    
T  41138027 tcggactgaccatgaatgcatgaacac 41138001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 9132647 - 9132516
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||    
T  9132647 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcccccatctttaaatcacatctttaa 9132548  T
Q  204 atcggactgaccatgaatgcatgaacaccaaa 235  Q
    |||||||| || ||||||||||||||||||||    
T  9132547 atcggactaactatgaatgcatgaacaccaaa 9132516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 105 - 235
Target Start/End: Complemental strand, 23633398 - 23633267
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 203  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  23633398 atgcaatgtcactaactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 23633299  T
Q  204 atcggactgaccatgaatgcatgaacaccaaa 235  Q
    |||||||||||||||||| |||||||| ||||    
T  23633298 atcggactgaccatgaattcatgaacatcaaa 23633267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 144
Target Start/End: Original strand, 89878 - 89988
Alignment:
Q  33 tttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatat 132  Q
    ||||||||||||||  |||| || |  ||||| |||||||||||||||||| || || ||||||||| ||| ||||||||||||||||||||||||||||    
T  89878 tttaaataattacatgtctttaaatcacacatgttttaattacacatcttc-aagtaaacttgcagtaatgtatgcaatgtccctaactcgactctatat 89976  T
Q  133 gcatgtggtacc 144  Q
    |||||| |||||    
T  89977 gcatgtagtacc 89988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 18515036 - 18514938
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatc-ttaaattat-cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaa 110  Q
    ||||||||||||||||||||||||||||||||||  || ||| ||  | || ||||||||||||||||||||| || |||||||||||||||| ||||||    
T  18515036 acatcattgaatatcacatctttaaataattacatgtctttacatcgtacatatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaa 18514938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 18249972 - 18249887
Alignment:
Q  60 cacatcttttaattacacatcttcgaaatagacttgcagt--tatggatgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    ||||||||| ||||| |||||||  ||||||||||| |||  |||| ||| ||||||| ||||||||||||||||||||||||||||    
T  18249972 cacatctttaaattaaacatctta-aaatagacttgtagtgttatgtatgtaatgtccttaactcgactctatatgcatgtggtacc 18249887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 19474476 - 19474425
Alignment:
Q  109 aatgtccctaactcgactctatatgcatgtggtaccggttttggatatcaga 160  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  19474476 aatgtccctaacttgactctatatgcatgtggtaccgtttttgaatatcaga 19474425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 52
Target Start/End: Complemental strand, 18250004 - 18249965
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatctt 52  Q
    |||||| ||||||||||||||||||||| |||||||||||    
T  18250004 acatcaatgaatatcacatctttaaatagttacacatctt 18249965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 147; Significance: 1e-77; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 19770312 - 19770139
Alignment:
Q  60 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcag 159  Q
    |||||||||||||||||||||||| |||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  19770312 cacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaactcgactctatatgcatgtggtaccggttttggatatcag 19770214  T
Q  160 aattatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19770213 agttatgttactgatttatcccccatctttaaacacatctttaaatcggactgaccatgaatgcatgaacaccaa 19770139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 234
Target Start/End: Original strand, 19891695 - 19891910
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||||||||||||||||||  ||||||||||||| |||||||||||| |||||||||||||| |||||||| | || ||||| ||||||||||     
T  19891695 tcattgaatatcacatctttaaataggtacacatcttaaaatatcacatctttaaattacacatcttc-aaatagacctacacttatgtatgcaatgtct 19891793  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    |||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||     
T  19891794 ctaactcgactctatatgcatgtggtaccggttttggatat--gagttatgttactgatttataccccatctttaaatacatctctaaattggactgact 19891891  T
Q  216 atgaatgcatgaacaccaa 234  Q
    | |||||||||||||||||    
T  19891892 acgaatgcatgaacaccaa 19891910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 16 - 235
Target Start/End: Original strand, 9547622 - 9547840
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    ||||||||||||||||||||||||| | ||||||||| ||  |||||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||     
T  9547622 tcattgaatatcacatctttaaatagtcacacatcttgaaacatcacatcttataattacacatcttc-aaatagacctacagttatgtatgcaatgtct 9547720  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgac 214  Q
    |||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  9547721 ctaactcgactctacatgcatgtggtaccggttttggatatcaaagttatgttactgatttat-ccccatctttaaatcacatctttaaatcgaactgac 9547819  T
Q  215 catgaatgcatgaacaccaaa 235  Q
    |||| ||||||| ||| ||||    
T  9547820 catgcatgcatgtacatcaaa 9547840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 22468810 - 22468952
Alignment:
Q  99 ttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa------ 192  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||   ||||||||||||||  | |||||||||||||| |||||||||||||          
T  22468810 ttatgtatgcaatgttcctaactcgactctatatgcatgtagtacatattttggatatcagaggtgtgttactgatttat-ccccatctttaaatcttaa 22468908  T
Q  193 --cacatctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
       |||||||||||||||| ||||||||||||||||||||||||    
T  22468909 attacatctttaaatcggattgaccatgaatgcatgaacaccaa 22468952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 12876176 - 12876106
Alignment:
Q  123 gactctatatgcatgtggtaccg-gttttggatatcagaattatgttactgatttatcccccatctttaaa 192  Q
    ||||||||||| ||||||||||  ||||||||| ||||| ||||||||| || | ||||||||||||||||    
T  12876176 gactctatatgtatgtggtaccatgttttggatgtcagagttatgttaccgagtaatcccccatctttaaa 12876106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 19565316 - 19565277
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  19565316 atgcaatgtctctaactcgaatctatatgcatgtggtacc 19565277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 144
Target Start/End: Complemental strand, 20738985 - 20738946
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  20738985 atgcaatgtgcctaactcggctctatatgcatgtggtacc 20738946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 22468752 - 22468806
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatctt 67  Q
    ||||||||||||| |||||||| ||||| ||||||||||| || || ||||||||    
T  22468752 acatcattgaataacacatcttaaaatagttacacatctttaaataacacatctt 22468806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 158
Target Start/End: Original strand, 17729507 - 17729544
Alignment:
Q  121 tcgactctatatgcatgtggtaccggttttggatatca 158  Q
    |||||| |||||||||||||||||| ||||||||||||    
T  17729507 tcgactatatatgcatgtggtaccgtttttggatatca 17729544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 234
Target Start/End: Complemental strand, 19565200 - 19565160
Alignment:
Q  194 acatctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
    ||||| |||||| ||||||| ||||||||||||||||||||    
T  19565200 acatcgttaaataggactgagcatgaatgcatgaacaccaa 19565160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 172684 - 172466
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    ||||||| ||||||||||||||||| ||||| ||| |||| ||||||||||||||||||||| | ||| |||||||| |  | ||||| ||| ||||||     
T  172684 tcattgagtatcacatctttaaatagttacatatcgtaaaatatcacatcttttaattacaccttttc-aaatagacctataattatgtatgtaatgtct 172586  T
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 215  Q
    |||||||||||||||||||||||| || ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  172585 ctaactcgactctatatgcatgtgatatcggttttggatatcatagttatgttactgatttatcccccatctttaaacacatctttaaatcggactgacc 172486  T
Q  216 atgaatgcatgaacaccaaa 235  Q
    ||||||||||||||||||||    
T  172485 atgaatgcatgaacaccaaa 172466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 106674 - 106885
Alignment:
Q  17 cattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccc 116  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |    
T  106674 cattgaatatcacatcttaaaataattacacttcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctc 106772  T
Q  117 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||| |||||||| |||||||||||||| | |||||     
T  106773 taactcgactctatatgcatgtggtaccggttttggatatcagagttatgttactgatttat-tcccgtctttaaatcacatctttaaatcagtctgact 106871  T
Q  216 atgaatgcatgaac 229  Q
    ||||||||||||||    
T  106872 atgaatgcatgaac 106885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 98 - 235
Target Start/End: Original strand, 15300 - 15437
Alignment:
Q  98 gttatggatgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacat 197  Q
    |||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15300 gttatgtaagcaatgtctctaactcgactctatatgcatgtagtaccggttttggatatcagagttatgttactgatttatcccccatctttaaacacat 15399  T
Q  198 ctttaaatcggactgaccatgaatgcatgaacaccaaa 235  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  15400 ctttaaatcggactgaccatgaatgcatgaacatcaaa 15437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 105 - 235
Target Start/End: Original strand, 16092412 - 16092543
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaa 203  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  16092412 atgcaatgtccctaactcgactatatatgtatgtggtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcacatctttaa 16092511  T
Q  204 atcggactgaccatgaatgcatgaacaccaaa 235  Q
    |||||||||| |||||||||||||||||||||    
T  16092512 atcggactgatcatgaatgcatgaacaccaaa 16092543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 105 - 231
Target Start/End: Complemental strand, 20264813 - 20264687
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaacacatctttaaa 204  Q
    |||||||||||||||||||||||||||||||||||||||  |||||| | |||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  20264813 atgcaatgtccctaactcgactctatatgcatgtggtacttgttttgaacatcagagttatgttactgatttatcccccagctttaaacacatctttaaa 20264714  T
Q  205 tcggactgaccatgaatgcatgaacac 231  Q
    |||||||||||||||||||||||||||    
T  20264713 tcggactgaccatgaatgcatgaacac 20264687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 144
Target Start/End: Complemental strand, 32625671 - 32625541
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatctt-aaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaat 111  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| || |||||||||||||||| |||||||    
T  32625671 acataattgaatatcacatctttaaataattacacgtctttaaatta-cacatcttttaattacacatcttc-aagtagacttgcagttatgtatgcaat 32625574  T
Q  112 gtccctaactcgactctatatgcatgtggtacc 144  Q
    |||||||||||||||||||||||||||||||||    
T  32625573 gtccctaactcgactctatatgcatgtggtacc 32625541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 135
Target Start/End: Original strand, 34892182 - 34892295
Alignment:
Q  21 gaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaac 120  Q
    ||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| |||||||||| |||||    
T  34892182 gaatatcacatctttaaataggtacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtctctaac 34892280  T
Q  121 tcgactctatatgca 135  Q
    |||||||||||||||    
T  34892281 tcgactctatatgca 34892295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 38991701 - 38991788
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||||||    
T  38991701 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaggtatgttactgatttatcctccatctttaaa 38991788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 117 - 231
Target Start/End: Complemental strand, 27401814 - 27401699
Alignment:
Q  117 taactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgacc 215  Q
    |||||||||||||||||| |||| ||||| ||||||||||||||  |||| | ||||| ||| ||||||||||||| ||||||||||||||||||||| |    
T  27401814 taactcgactctatatgcttgtgataccgattttggatatcagaggtatgctcctgatgtattccccatctttaaatcacatctttaaatcggactgatc 27401715  T
Q  216 atgaatgcatgaacac 231  Q
    |||||| |||||||||    
T  27401714 atgaatacatgaacac 27401699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 137
Target Start/End: Original strand, 20178635 - 20178711
Alignment:
Q  60 cacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatg 137  Q
    ||||||||||||| |||||||||| |||| ||| |||| ||||| |||||||||||||||||||||||||||||||||    
T  20178635 cacatcttttaatcacacatcttc-aaattgacatgcaattatgtatgcaatgtccctaactcgactctatatgcatg 20178711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 22385814 - 22385899
Alignment:
Q  105 atgcaatgtccctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa 192  Q
    |||||||||  | ||||||||||||||  |||||| |||||||| |||||||||||  |||||||||||||||||| |||||||||||    
T  22385814 atgcaatgtttcaaactcgactctata--catgtgataccggttatggatatcagaggtatgttactgatttatcctccatctttaaa 22385899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 30613327 - 30613270
Alignment:
Q  116 ctaactcgactctatatgcatgtggtaccggttttggatatcagaattatgttactga 173  Q
    ||||||||||| |||||||||||||||||  ||||||||||||||  |||||| ||||    
T  30613327 ctaactcgactttatatgcatgtggtaccttttttggatatcagaggtatgtttctga 30613270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 158
Target Start/End: Original strand, 29890519 - 29890563
Alignment:
Q  115 cctaactcgactctatatgcatgtggtacc-ggttttggatatca 158  Q
    |||||||||||||||||||||||||||||| |||||| |||||||    
T  29890519 cctaactcgactctatatgcatgtggtaccaggttttagatatca 29890563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Original strand, 16092227 - 16092297
Alignment:
Q  13 acatcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 83  Q
    |||||||| ||||||||||||| ||||| |||||| | || || || ||||||| |||||| |||||||||    
T  16092227 acatcattaaatatcacatcttaaaatagttacactttttcaaataacacatctattaattccacatcttc 16092297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 175
Target Start/End: Complemental strand, 19467160 - 19467084
Alignment:
Q  100 tatggatgcaatgtccctaactcgactctatatgcatgtggtacc-ggttttggatatcagaattatgttactgatt 175  Q
    |||| ||||||||| |||||||| ||| || ||||||||||||||   ||||||||||||||  |||| ||||||||    
T  19467160 tatgtatgcaatgtacctaactcaactgtacatgcatgtggtaccaatttttggatatcagaggtatggtactgatt 19467084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 12012 - 12139
Alignment:
Q  16 tcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttcgaaatagacttgcagttatggatgcaatgtcc 115  Q
    |||||||||  |||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||| | |||||||| ||||||||||     
T  12012 tcattgaatgacacatccttaaatagttacacatcttaaaatatcacatcttttaattacacatcttc-aaatagacctacagttatgtatgcaatgtct 12110  T
Q  116 ctaactcgactctatatgcatgtggtacc 144  Q
    |||||||||||||||||||||||||||||    
T  12111 ctaactcgactctatatgcatgtggtacc 12139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 9784 - 9875
Alignment:
Q  140 gtaccggttttggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaaca 230  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||    
T  9784 gtaccggttttgaatatcagagttatgttactgatttatcccccatctttaaatcatatctttagatcggaccgaccatgaatgcatgaaca 9875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0449 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0449
Description:

Target: scaffold0449; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 150 - 234
Target Start/End: Complemental strand, 429 - 344
Alignment:
Q  150 tggatatcagaattatgttactgatttatcccccatctttaaa-cacatctttaaatcggactgaccatgaatgcatgaacaccaa 234  Q
    ||||||||| | ||||||||||||||||||| ||||||||||| |||||||||||||  |||||||||||||||||| || |||||    
T  429 tggatatcaaagttatgttactgatttatcctccatctttaaatcacatctttaaatatgactgaccatgaatgcattaaaaccaa 344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 221835 - 221894
Alignment:
Q  85 aaatagacttgcagttatggatgcaatgtccctaactcgactctatatgcatgtggtacc 144  Q
    ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  221835 aaatatacttgcagttatgtatgcaatgtcactaactcgactctatatgcatgtggtacc 221894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 177
Target Start/End: Complemental strand, 66752 - 66678
Alignment:
Q  105 atgcaatgtccctaactcgactctatatg--catgtggtaccggttttggatatcagaattatgttactgattta 177  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||||||||||||  ||||||  |||||||    
T  66752 atgcaatgtccctaactcgactctatatgcacatgtcgtaccggttttggatatcagaggtatgttgttgattta 66678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 67021 - 66953
Alignment:
Q  15 atcattgaatatcacatctttaaataattacacatcttaaattatcacatcttttaattacacatcttc 83  Q
    |||||||||||||||||||| ||||| |||||  |||| || || |||||| |||||||| ||| ||||    
T  67021 atcattgaatatcacatcttaaaatagttacatttctttaaataacacatcctttaattaaacagcttc 66953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 144
Target Start/End: Original strand, 22871 - 22899
Alignment:
Q  116 ctaactcgactctatatgcatgtggtacc 144  Q
    |||||||||||||||||||||||||||||    
T  22871 ctaactcgactctatatgcatgtggtacc 22899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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