View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_36 (Length: 433)

Name: NF7829A_low_36
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_36
NF7829A_low_36
[»] chr7 (10 HSPs)
chr7 (36-360)||(37883880-37884207)
chr7 (218-303)||(38157224-38157309)
chr7 (268-318)||(38149497-38149547)
chr7 (115-152)||(33862940-33862977)
chr7 (109-146)||(38321847-38321884)
chr7 (115-147)||(35072744-35072776)
chr7 (115-147)||(35099081-35099113)
chr7 (238-298)||(38172720-38172780)
chr7 (115-147)||(42797404-42797436)
chr7 (115-147)||(43028248-43028280)
[»] scaffold0176 (1 HSPs)
scaffold0176 (115-152)||(22999-23036)
[»] chr6 (4 HSPs)
chr6 (115-152)||(25563975-25564012)
chr6 (115-152)||(25575108-25575145)
chr6 (115-152)||(26003459-26003496)
chr6 (115-152)||(26103487-26103524)


Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-159; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 36 - 360
Target Start/End: Complemental strand, 37884207 - 37883880
Alignment:
Q  36 taatgatttttctcgctcctcagcactttccaaaataccttcaataaccttggagaattaacaaagaatgttcccattctat--tcaaaggatgaaagat 133  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||    
T  37884207 taatgatttttctcgctcttcagcactttccaaaataccttcaataaccttggagcattaacaaagaatgttcccattctatattcaaaggatgaaagat 37884108  T
Q  134 tcaatgcatcaatatatatgtttctaggatagagttccttgcagccacaattaatcacctttaaatggcgcaactttgagttgataatattcaaatcaga 233  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  37884107 tcaatgcatcaatatatatgtttccaggatagagttccttgcagccacaattaatcaactttaaatggcgcaactttgagttgataatattcaaatcaga 37884008  T
Q  234 tttgatccaacaatgtataaaggtgacattcttaagtttgagacattcag-aaaacaaaagaggcatgacaacatgttgaagacattctcgtagtccaat 332  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37884007 tttgatccaacaatgtataaaggtgacattcttaagtttgagacattcagaaaaaaaaaagaggcatgacaacatgttgaagacattctcgtagtccaat 37883908  T
Q  333 caacttaatcgttgtcacatttttcagt 360  Q
    ||||||||||||||||| ||||||||||    
T  37883907 caacttaatcgttgtcatatttttcagt 37883880  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 303
Target Start/End: Original strand, 38157224 - 38157309
Alignment:
Q  218 taatattcaaatcagatttgatccaacaatgtataaaggtgacattcttaagtttgagacattcagaaaacaaaagaggcatgaca 303  Q
    |||||||||||| | || |||||||||| |   |||||||||||| ||  |||| |||||||||||||||||||||| | ||||||    
T  38157224 taatattcaaattatatatgatccaacagttcttaaaggtgacatcctcgagttggagacattcagaaaacaaaagacgaatgaca 38157309  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 318
Target Start/End: Original strand, 38149497 - 38149547
Alignment:
Q  268 agtttgagacattcagaaaacaaaagaggcatgacaacatgttgaagacat 318  Q
    |||| |||||||||||||||||||||||| |||||| ||| ||| ||||||    
T  38149497 agttggagacattcagaaaacaaaagaggtatgacatcatcttggagacat 38149547  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 33862977 - 33862940
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaatatatat 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  33862977 tattcaaaggatgaaagatttaatgcatcaatagatat 33862940  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 38321884 - 38321847
Alignment:
Q  109 ccattctattcaaaggatgaaagattcaatgcatcaat 146  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  38321884 ccattatattcaaaggatgagagattcaatgcatcaat 38321847  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 35072744 - 35072776
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaata 147  Q
    |||||||||||||| ||||||||||||||||||    
T  35072744 tattcaaaggatgagagattcaatgcatcaata 35072776  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 35099081 - 35099113
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaata 147  Q
    |||||||||||||| ||||||||||||||||||    
T  35099081 tattcaaaggatgagagattcaatgcatcaata 35099113  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 38172720 - 38172780
Alignment:
Q  238 atccaacaatgtataaaggtgacattcttaagtttgagacattcagaaaacaaaagaggca 298  Q
    ||||||||||   |||||||||| | || ||||| ||||||||||||||||||| ||||||    
T  38172720 atccaacaattcttaaaggtgacgtcctcaagttggagacattcagaaaacaaatgaggca 38172780  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 42797436 - 42797404
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaata 147  Q
    |||||||||||||| ||||||||||||||||||    
T  42797436 tattcaaaggatgagagattcaatgcatcaata 42797404  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 43028280 - 43028248
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaata 147  Q
    |||||||||||||| ||||||||||||||||||    
T  43028280 tattcaaaggatgagagattcaatgcatcaata 43028248  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Original strand, 22999 - 23036
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaatatatat 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  22999 tattcaaaggatgaaagatttaatgcatcaatagatat 23036  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 25564012 - 25563975
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaatatatat 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  25564012 tattcaaaggatgaaagatttaatgcatcaatagatat 25563975  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 25575145 - 25575108
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaatatatat 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  25575145 tattcaaaggatgaaagatttaatgcatcaatagatat 25575108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 26003496 - 26003459
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaatatatat 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  26003496 tattcaaaggatgaaagatttaatgcatcaatagatat 26003459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 26103524 - 26103487
Alignment:
Q  115 tattcaaaggatgaaagattcaatgcatcaatatatat 152  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  26103524 tattcaaaggatgaaagatttaatgcatcaatagatat 26103487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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