View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_361 (Length: 243)

Name: NF7829A_low_361
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_361
NF7829A_low_361
[»] chr1 (13 HSPs)
chr1 (33-225)||(9257539-9257731)
chr1 (33-225)||(9299979-9300171)
chr1 (30-221)||(8939259-8939450)
chr1 (29-183)||(8926832-8926986)
chr1 (35-225)||(9364284-9364474)
chr1 (29-225)||(9242570-9242766)
chr1 (35-225)||(9337425-9337615)
chr1 (30-222)||(9466767-9466959)
chr1 (45-221)||(8962201-8962377)
chr1 (33-179)||(9377603-9377749)
chr1 (33-175)||(9236488-9236630)
chr1 (29-85)||(8861971-8862027)
chr1 (57-145)||(8979311-8979399)
[»] chr3 (1 HSPs)
chr3 (23-183)||(9171372-9171532)
[»] scaffold0690 (1 HSPs)
scaffold0690 (29-220)||(1487-1678)
[»] chr6 (1 HSPs)
chr6 (29-220)||(15910428-15910619)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 33 - 225
Target Start/End: Complemental strand, 9257731 - 9257539
Alignment:
Q  33 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 132  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9257731 ggagatgggaaggagttcataaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatttcatc 9257632  T
Q  133 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagt 225  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  9257631 gtgctctagtctatgacttcttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggacaagt 9257539  T

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Target: chr1; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 9299979 - 9300171
Alignment:
Q  33 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 132  Q
    |||||||| ||||||||||||||||||||||||||  |||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||    
T  9299979 ggagatgggaaggagttcataaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatc 9300078  T
Q  133 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagt 225  Q
    ||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  9300079 gtgctctagtctatgacttcttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagt 9300171  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 8939259 - 8939450
Alignment:
Q  30 gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc 129  Q
    ||||||||||| |  |||||||||||||||||||||||| |||| ||||| || ||| | |||| |||||| |||||| ||||||||||||||||||||     
T  8939259 gagggagatgggagagagttcataaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggatttt 8939358  T
Q  130 atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggac 221  Q
    |||||||| | || |||||||| |||||||||| ||| ||||| || ||||||| | | |||  |||||| |||  ||||||||| ||||||    
T  8939359 atcgtgctttggtttatgactttttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggac 8939450  T

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Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 29 - 183
Target Start/End: Original strand, 8926832 - 8926986
Alignment:
Q  29 agagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggattt 128  Q
    |||||||||||| |  |||||||||||||| ||||||||| |||| |||||||| ||| | |||| ||| || |||||| ||||||||||||||||||||    
T  8926832 agagggagatgggagtgagttcataaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattt 8926931  T
Q  129 catcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 183  Q
     |||||||||| || |||||||| ||||| |||| ||||||||| || |||||||    
T  8926932 tatcgtgctctggtttatgactttttcccgaatggttcgttgcaaaacttcattt 8926986  T

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Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 9364284 - 9364474
Alignment:
Q  35 agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt 134  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||||||||  || || |||||| |||| || || ||||| |||| ||||    
T  9364284 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgtcgt 9364383  T
Q  135 gctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagt 225  Q
    ||| ||||||||||||| ||  |||||| |||||||||||||||||||| |||  | | || |||||||  ||||||||||||||| ||||    
T  9364384 gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagt 9364474  T

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Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 9242766 - 9242570
Alignment:
Q  29 agagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggattt 128  Q
    ||||| |||||| ||||| ||||||||||||||||||||  |||| || || || ||||| ||||  || || |||||| |||  || || |||||||||    
T  9242766 agaggaagatgggaaggaattcataaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggattt 9242667  T
Q  129 catcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagt 225  Q
    |  |||||| ||||||||||||| |||||||||| |||||||||||||||||||| | | || | ||||||||||  ||||||||||||||| ||||    
T  9242666 cgccgtgctttagtctatgactttttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttggatgggataagt 9242570  T

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Target: chr1; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 35 - 225
Target Start/End: Original strand, 9337425 - 9337615
Alignment:
Q  35 agatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgt 134  Q
    |||||| ||||| ||||||||||||||||||||  |||| ||||| |||||||||||||  || || |||||  |||| || || ||||| |||| ||||    
T  9337425 agatgggaaggaattcataaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgtcgt 9337524  T
Q  135 gctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggacaagt 225  Q
    ||| ||||||||||||| ||  |||||| |||||||||||||||||||| |||  | | || |||||||  ||||||||||||||| ||||    
T  9337525 gctttagtctatgactttttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagt 9337615  T

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Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 222
Target Start/End: Complemental strand, 9466959 - 9466767
Alignment:
Q  30 gagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttc 129  Q
    ||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||||| |||| |||||| |||||| |||| || || |||||||||     
T  9466959 gagggagatggtaaggagttcataaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggatttt 9466860  T
Q  130 atcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggaca 222  Q
    | || | | ||||||| ||  | || |||| || ||| |||||||||||  ||| ||| || | ||||||||||  ||| |||||||||||||    
T  9466859 accgcggtttagtctacgatctttttccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgcttttcttggatgggaca 9466767  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 45 - 221
Target Start/End: Original strand, 8962201 - 8962377
Alignment:
Q  45 gagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgtgctctagtct 144  Q
    ||||||||||||||||| |||||| |||| |||||||| ||| | |||| |||||| || ||| ||||||| || ||||||||| |||||||| | || |    
T  8962201 gagttcataaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggattttatcgtgctttggttt 8962300  T
Q  145 atgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatgggac 221  Q
    ||||||| ||||| |||| ||||||||| || ||||||| | | |||  |||||| |||  ||||||||| ||||||    
T  8962301 atgactttttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggac 8962377  T

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Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 179
Target Start/End: Original strand, 9377603 - 9377749
Alignment:
Q  33 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 132  Q
    ||||||||||| || ||||| ||||||||  ||||| |||| ||||| || ||| |||||| ||| ||||||||  | || ||||| |||||||| || |    
T  9377603 ggagatggaaacgatttcatcaatgaagtccgaactatgggaaaaattcatcatttcaatgttgttcgcttgctcggattctgtgctgatggattccacc 9377702  T
Q  133 gtgctctagtctatgacttcttcccaaatgattcgttgcagaaattc 179  Q
    ||||||| |||||||| ||||| |||||||  |||||||| ||||||    
T  9377703 gtgctcttgtctatgatttctttccaaatgggtcgttgcaaaaattc 9377749  T

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Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 9236630 - 9236488
Alignment:
Q  33 ggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatc 132  Q
    ||||||||||| || ||||| || ||||| |||||| |||| ||||| || ||| |||||| ||| ||||| ||  | |||||||| |||||||| || |    
T  9236630 ggagatggaaacgatttcatcaacgaagtcggaactatgggaaaaattcatcatgtcaatgttgttcgcttactcggattttgtgctgatggattccacc 9236531  T
Q  133 gtgctctagtctatgacttcttcccaaatgattcgttgcagaa 175  Q
    ||||||| |||||||| ||||| || ||||  || ||||||||    
T  9236530 gtgctcttgtctatgatttctttccgaatggctccttgcagaa 9236488  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 8862027 - 8861971
Alignment:
Q  29 agagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccacca 85  Q
    ||||||||| || || |||||||| ||||||||||||| | |||| |||||||||||    
T  8862027 agagggagaagggaaagagttcatcaatgaagtgggaattatgggcaaaatccacca 8861971  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 8979399 - 8979311
Alignment:
Q  57 gaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggatttcatcgtgctctagtcta 145  Q
    |||||||||| | |||| |||||||||||  |||||| ||| || |||||| |||| ||||| || ||| ||||||||| ||| |||||    
T  8979399 gaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaattcatcgtgttcttgtcta 8979311  T

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Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 9171372 - 9171532
Alignment:
Q  23 taacatagagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgat 122  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||| |||||| ||||||| ||||||    
T  9171372 taacacagagggagatgggaaggagttcataaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgat 9171471  T
Q  123 ggatttcatcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcattt 183  Q
    |||||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||    
T  9171472 ggatttcatcgtgctctagtctatgattttttcccaaatggttctttgcagaaattcattt 9171532  T

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Target: scaffold0690 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 29 - 220
Target Start/End: Original strand, 1487 - 1678
Alignment:
Q  29 agagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggattt 128  Q
    |||||||||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||  || || |||||| ||||||| || ||||| |||    
T  1487 agagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggtttt 1586  T
Q  129 catcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 220  Q
    | ||||||| |||| |||||||| || ||||||| |||||| ||||||||||| | ||  |  | ||||||||||  |||||||||||||||    
T  1587 cgtcgtgctttagtttatgacttttttccaaatggttcgttacagaaattcatatctcacctgaacaacaaagatgatttccttggatggga 1678  T

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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 29 - 220
Target Start/End: Complemental strand, 15910619 - 15910428
Alignment:
Q  29 agagggagatggaaaggagttcataaatgaagtgggaactgtgggtaaaatccaccatctcaatgctgtccgcttgctttgcttttgtgccgatggattt 128  Q
    |||||||||||| ||||| ||||||||||||||||||||  |||| |||||||||||||||||||  || || |||||  |||||||  | ||||| |||    
T  15910619 agagggagatgggaaggaattcataaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggtttt 15910520  T
Q  129 catcgtgctctagtctatgacttcttcccaaatgattcgttgcagaaattcatttgtcctcctagcaacaaagatagtttccttggatggga 220  Q
    ||||||||| |||| |||||||| || ||||||| |||||| || |||||||| | ||  || | ||||||||||  |||||||||||||||    
T  15910519 catcgtgctttagtttatgacttttttccaaatggttcgttacaaaaattcatatctcacccgaacaacaaagatgatttccttggatggga 15910428  T

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