View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_366 (Length: 243)

Name: NF7829A_low_366
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_366
NF7829A_low_366
[»] chr5 (1 HSPs)
chr5 (30-137)||(16570521-16570627)
[»] chr8 (2 HSPs)
chr8 (32-138)||(26835618-26835723)
chr8 (32-123)||(13580397-13580487)
[»] chr3 (2 HSPs)
chr3 (171-205)||(44989495-44989529)
chr3 (30-138)||(54417046-54417153)
[»] chr4 (1 HSPs)
chr4 (37-138)||(36071581-36071681)
[»] chr2 (1 HSPs)
chr2 (32-138)||(40876949-40877054)
[»] chr6 (2 HSPs)
chr6 (32-84)||(9815749-9815801)
chr6 (32-128)||(12174320-12174415)
[»] chr1 (1 HSPs)
chr1 (32-84)||(8246797-8246849)


Alignment Details
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 137
Target Start/End: Complemental strand, 16570627 - 16570521
Alignment:
Q  30 atcaaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaat 129  Q
    |||||| |||||||||||||||  |||||  ||| ||||| ||  |||||||||| || ||||||| | ||||||||| ||||||| ||||||||||||     
T  16570627 atcaaaattattatttttacttattagttggtaccatatagatatatttcttttt-aattcactttgattaattctattaaaaatatatttttagagaac 16570529  T
Q  130 cttgatta 137  Q
     |||||||    
T  16570528 tttgatta 16570521  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 26835723 - 26835618
Alignment:
Q  32 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatct 131  Q
    |||| ||||||||||||||| ||||||| ||| ||||||||  ||||| ||||||| |  |||| | |||||||||  |||||| ||||||||||||  |    
T  26835723 caaaattattatttttacttaatagttagtacaatataaatatatttc-tttttaattttcttttattaattctattgaaaatatatttttagagaactt 26835625  T
Q  132 tgattat 138  Q
    |||||||    
T  26835624 tgattat 26835618  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 13580487 - 13580397
Alignment:
Q  32 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacattttta 123  Q
    |||| ||||||||||||||| ||||||| || |||||||||  ||||| ||||||| || |||| | |||||||||  |||||| |||||||    
T  13580487 caaaattattatttttacttaatagttagtattatataaatatatttc-tttttaattcgctttgattaattctattgaaaatatattttta 13580397  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 44989495 - 44989529
Alignment:
Q  171 gaatactttcaaataattaaagggtacaaattcat 205  Q
    |||||||||||||||||||||||||||||||||||    
T  44989495 gaatactttcaaataattaaagggtacaaattcat 44989529  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 54417153 - 54417046
Alignment:
Q  30 atcaaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaat 129  Q
    |||||| |||||||||||||||| |||||| | ||||||| ||  |||||  |||||| ||||||| | ||||||||   ||||||  |||||| |||||    
T  54417153 atcaaaattattatttttacttggtagttagtgctatatagatacatttc-cttttaattcactttgattaattctactgaaaatatgtttttaaagaat 54417055  T
Q  130 cttgattat 138  Q
     ||||||||    
T  54417054 tttgattat 54417046  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 36071681 - 36071581
Alignment:
Q  37 ttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatcttgatt 136  Q
    ||||||||||||||||||||||| ||||||||| ||  ||||| ||||||| |  |||| | |||||| ||  |||||| ||||||||||||  ||||||    
T  36071681 ttattatttttacttgatagttagtactatatagatatatttc-tttttaattttctttgattaattcaattgaaaatatatttttagagaactttgatt 36071583  T
Q  137 at 138  Q
    ||    
T  36071582 at 36071581  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 40877054 - 40876949
Alignment:
Q  32 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaatct 131  Q
    |||| |||||||||||||||| |||||| || |||||||||  ||||| |||||||||   ||  | |||||||||  |||||| ||||||| |||| ||    
T  40877054 caaaattattatttttacttggtagttagtattatataaatatatttc-tttttaacttgtttggattaattctattgaaaatatatttttatagaacct 40876956  T
Q  132 tgattat 138  Q
    |||||||    
T  40876955 tgattat 40876949  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 9815801 - 9815749
Alignment:
Q  32 caaatttattatttttacttgatagttaatactatataaatggatttcttttt 84  Q
    |||| |||||||||||||||  |||||||||||||||| ||  ||||||||||    
T  9815801 caaaattattatttttacttagtagttaatactatatagatatatttcttttt 9815749  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 12174320 - 12174415
Alignment:
Q  32 caaatttattatttttacttgatagttaatactatataaatggatttcttttttaactcactttaactaattctatcaaaaatacatttttagagaa 128  Q
    |||| |||||||||||||||  |||||| ||||||||| ||  ||||| ||||||| ||  ||| | ||||| ||| ||||||| ||||||||||||    
T  12174320 caaaattattatttttacttagtagttagtactatatagatatatttc-tttttaattcgttttgattaattatattaaaaatatatttttagagaa 12174415  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 8246849 - 8246797
Alignment:
Q  32 caaatttattatttttacttgatagttaatactatataaatggatttcttttt 84  Q
    |||| ||||||||||||||| ||||||| ||||||||| ||  ||||||||||    
T  8246849 caaaattattatttttacttaatagttagtactatatagatatatttcttttt 8246797  T

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