View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_37 (Length: 431)
Name: NF7829A_low_37
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 38990990 - 38990706
Alignment:
| Q |
1 |
ggtagtcatggtcaagtggatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgagtagcgccactcttatgaagaaaaccaagtttt |
100 |
Q |
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| T |
38990990 |
ggtagtcatggtcaagtgtatggtggaattgttgtagggaaggtcatgacttcaagtgttgttatgattagcgccactcttatgaagaaaaccaagtttt |
38990891 |
T |
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| Q |
101 |
atatggtggcgtagtcctttatcctccccctcccgatgtgaatttggtgcaatggaaccacttcactcatact---------------tataatt-actg |
184 |
Q |
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| T |
38990890 |
atatggtggcgtagtcctttatcctccccctccctatgtgaatgtggtgcaatggaaccacttcactcatacttcttaggagttttcctataattgttta |
38990791 |
T |
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| Q |
185 |
gataaaatcattaaggtttgaataaaatggtgctgatatttctcattgttatacttcttaaataaaaatatgttattacaagttt |
269 |
Q |
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| T |
38990790 |
aaaaaaatcattaatgtttaaataaaatgctcctgatatttctcgttgttatacttcttaaataaaaatatgttattacaagttt |
38990706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 428
Target Start/End: Complemental strand, 38990651 - 38990612
Alignment:
| Q |
389 |
tgaactgtgcttctctcaagatctcatgttcgattctctc |
428 |
Q |
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| T |
38990651 |
tgaagtgtgtttctctcaagatctcatgttcgattctctc |
38990612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 19525563 - 19525519
Alignment:
| Q |
386 |
tcttgaactgtgcttctctcaagatctcatgttcgattctctctg |
430 |
Q |
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| T |
19525563 |
tcttgaagtgtgtttctctcaagatctcaggttcgattccctctg |
19525519 |
T |
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