View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_370 (Length: 243)
Name: NF7829A_low_370
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_370 |
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Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 24 - 235
Target Start/End: Original strand, 19558998 - 19559209
Alignment:
| Q |
24 |
actgaaccaggctacttcaaaagatgacactaaagaatatttatcagaaatgatatttttgacaacacaaatgttgccatgacaccatataacgacaatg |
123 |
Q |
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| T |
19558998 |
actgaaccaggctacttcaaaagatgacactaaagaatatttatcagaaatgatatttttgacaacacaaatgttgccatgacaccatataatgacaatg |
19559097 |
T |
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| Q |
124 |
ttgtgggtttttctattgaactttcctctctttcggtcacttccacagttgtgttggccgttggaagtattttcattcatgtgcaggaccggttttgaat |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
19559098 |
ttgtgggtttttctattgaactttcctctctttcggtcacttccacagttgtgttggccgttggaagtattttcattcatgtgcaggaacggttttgaat |
19559197 |
T |
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| Q |
224 |
ttgtgatgtcca |
235 |
Q |
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|||||||||||| |
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| T |
19559198 |
ttgtgatgtcca |
19559209 |
T |
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