View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_372 (Length: 243)
Name: NF7829A_low_372
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_372 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 4082634 - 4082858
Alignment:
| Q |
20 |
ctatcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttgagcaaccatatacggttttcttnnnn |
119 |
Q |
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| T |
4082634 |
ctatcaactaaattttccaagtttagactctctctttcccctacatgtttccttccctacaactccaaaatttgagcaaccatatacggttttcttcaac |
4082733 |
T |
|
| Q |
120 |
nnnnnnnnnnnnnnnnnnnnntttccatttgatcatttcccaaaac--catatatatttctataggaatttgaattccccagacacccttcaatcatcgt |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| | |
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| T |
4082734 |
aaaccaaaccaaaaaacaaaatttccatttgatcatttcccaaaactatatatatatttctataggaatttcaattccccagacacccttcaatcatcat |
4082833 |
T |
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| Q |
218 |
ttgccaagaaacaaaaccattaaat |
242 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
4082834 |
ttgccaagaaacaaaaccattaaat |
4082858 |
T |
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