View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_382 (Length: 240)

Name: NF7829A_low_382
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_382
NF7829A_low_382
[»] chr7 (3 HSPs)
chr7 (18-214)||(8189682-8189878)
chr7 (18-214)||(14290948-14291144)
chr7 (18-166)||(48350367-48350515)
[»] chr6 (6 HSPs)
chr6 (18-214)||(4715327-4715523)
chr6 (18-214)||(4023426-4023622)
chr6 (18-214)||(4709717-4709913)
chr6 (18-214)||(4735133-4735329)
chr6 (18-214)||(7066473-7066669)
chr6 (18-166)||(34652038-34652186)
[»] chr2 (2 HSPs)
chr2 (18-214)||(2160837-2161033)
chr2 (18-214)||(34838041-34838237)
[»] chr1 (5 HSPs)
chr1 (18-214)||(45019020-45019216)
chr1 (18-166)||(39056562-39056710)
chr1 (18-171)||(41302371-41302524)
chr1 (17-215)||(35087232-35087430)
chr1 (18-165)||(41294302-41294449)
[»] chr5 (3 HSPs)
chr5 (18-166)||(2963135-2963283)
chr5 (18-166)||(29977149-29977297)
chr5 (18-166)||(30019345-30019493)
[»] chr3 (2 HSPs)
chr3 (18-166)||(9573840-9573988)
chr3 (17-166)||(8049956-8050104)
[»] scaffold0510 (2 HSPs)
scaffold0510 (18-171)||(5732-5885)
scaffold0510 (18-165)||(12171-12318)
[»] chr8 (1 HSPs)
chr8 (18-166)||(8010205-8010353)
[»] scaffold0045 (1 HSPs)
scaffold0045 (24-214)||(5918-6108)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 8189878 - 8189682
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8189878 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 8189779  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  8189778 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 8189682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 14290948 - 14291144
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14290948 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 14291047  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  14291048 tatgggtatggcactggtattgccattgtgtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 14291144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 48350515 - 48350367
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  48350515 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 48350416  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  48350415 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 48350367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4715523 - 4715327
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4715523 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 4715424  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  4715423 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 4715327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4023622 - 4023426
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4023622 gacatcacctccggagggtaatctgcctgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 4023523  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  4023522 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 4023426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4709913 - 4709717
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  4709913 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcatggtttgtaggttccagtatattccaag 4709814  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  4709813 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 4709717  T

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Target: chr6; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 4735329 - 4735133
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  4735329 gacatcacctccggagggtaccctgcttgcttctgcactaaatactgagactgctgaagataagtattagcatggtttgtaggttccagtatattccaag 4735230  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  4735229 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 4735133  T

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Target: chr6; HSP #5
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 7066669 - 7066473
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  7066669 gacatcacctccggagggtaatctgcctgctgctgcactaaatactgagactgctgaagataagtattagcacagtttgtagctcccagcatattccaag 7066570  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||| |||||||||    
T  7066569 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtgattggcatctgaaatggttcggaccctgattgtggatg 7066473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 34652038 - 34652186
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  34652038 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 34652137  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  34652138 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 34652186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 2160837 - 2161033
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2160837 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgaggctgctgaagataagtattagcacggtttgtagcttccagcatattccaag 2160936  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  2160937 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 2161033  T

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Target: chr2; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 34838237 - 34838041
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34838237 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 34838138  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||    
T  34838137 tatggttatggcactggtattgccattgagtgtagctggcaaagtcaaaggcagttgtggttggcatctgaaatggttcggaccctgattgtggatg 34838041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 45019020 - 45019216
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45019020 gacatcacctccggagggtattctgcctgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 45019119  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| | ||||| |||||||||    
T  45019120 tatgggtatggcactggtattgccattgtgtgtagctggcaaagtcgaaggcagttgtggttggcatctgaaatggttcagaccctgattgtggatg 45019216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 39056710 - 39056562
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  39056710 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 39056611  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  39056610 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 39056562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 41302524 - 41302371
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||| || |  |||||||| ||||| |    
T  41302524 gacatcacctccggtgggtaccctgcctgctgctgcatcaaatactgagactgctgaagatatgtattagcacggttagttgagtccagcatgttccatg 41302425  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtag 171  Q
     ||| ||||||||||||||||||||||||| | |||| |||| |||||| ||||    
T  41302424 catgagtatggcactggtattgccattgagcgaagcttgcaacgtcaaaagtag 41302371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 215
Target Start/End: Original strand, 35087232 - 35087430
Alignment:
Q  17 ggacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaa 116  Q
    |||||||| ||||||||||||||||||||| |||||||  ||||||||||| ||||  | ||| || ||||||||||| || || |||||||| |||||     
T  35087232 ggacatcaactccggagggtaccctgcttgttgctgcatcaaatactgagaatgctagaaatatgtgttagcacggttagttgcctccagcatgttccat 35087331  T
Q  117 gtatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatgc 215  Q
    ||||| ||||||||||  | ||||||||  | ||||||||||||||| |||| ||   ||| ||| |||||||||||||||| ||||| ||||||||||    
T  35087332 gtatgagtatggcactaatgttgccattatgcgtagctggcaaagtcgaaggcagccatggatggaatctgaaatggttcgggccctggttgtggatgc 35087430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 41294302 - 41294449
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||| || ||||||||||| ||||||||||  |||||||| || ||||| |  || ||||| || ||||| || || |||||||| |||||||    
T  41294302 gacatcacctctggtgggtaccctgcatgctgctgcatcaaatactgggattgctggaagtaggtatttgctcggttagtggcgtccagcatgttccaag 41294401  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaa 165  Q
    | |  |||||||| |||||||||||||||| | |||| ||||| ||||    
T  41294402 tgtaagtatggcattggtattgccattgagcgaagcttgcaaaatcaa 41294449  T

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Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 2963135 - 2963283
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  2963135 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 2963234  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  2963235 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 2963283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Original strand, 29977149 - 29977297
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  29977149 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 29977248  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  29977249 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 29977297  T

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Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 30019493 - 30019345
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  30019493 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 30019394  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  30019393 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 30019345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 9573988 - 9573840
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||| || |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| ||||| |    
T  9573988 gacatcacctctggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatg 9573889  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||||    
T  9573888 tatgggtatggcactggtattgccattgagcgaagcttgcaaagtcaaa 9573840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 8049956 - 8050104
Alignment:
Q  17 ggacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaa 116  Q
    ||||||||||||||| ||||||||||  |||||| |||  |||||||||||||||| || ||| || ||||||||||| || || |||||||| || ||     
T  8049956 ggacatcacctccgg-gggtaccctgtctgctgccgcatcaaatactgagactgctaaaaatatgtgttagcacggttagttgcctccagcatgtttcat 8050054  T
Q  117 gtatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    ||||| |||| |||||||| ||||||||| | |||| | ||||| |||||    
T  8050055 gtatgagtattgcactggtgttgccattgggcgtagtttgcaaaatcaaa 8050104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 5885 - 5732
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| ||||||||||| ||||||||||  ||||||||||||||||||||||| |||||||||||||| || |  |||||||| ||||| |    
T  5885 gacatcacctccggtgggtaccctgcctgctgctgcatcaaatactgagactgctgaagatatgtattagcacggttagttgagtccagcatgttccatg 5786  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaaggtag 171  Q
     ||| ||||||||||||||||||||||||| | |||| |||| |||||| ||||    
T  5785 catgagtatggcactggtattgccattgagcgaagcttgcaacgtcaaaagtag 5732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 12318 - 12171
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    ||||||||||| || ||||||||||| ||||||||||  |||||||| || ||||| |  || ||||| || ||||| || || |||||||| |||||||    
T  12318 gacatcacctctggtgggtaccctgcatgctgctgcatcaaatactgggattgctggaagtaggtatttgctcggttagtggcgtccagcatgttccaag 12219  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaa 165  Q
    | |  |||||||| |||||||||||||||| | |||| ||||| ||||    
T  12218 tgtaagtatggcattggtattgccattgagcgaagcttgcaaaatcaa 12171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 8010353 - 8010205
Alignment:
Q  18 gacatcacctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaag 117  Q
    |||||||||||||| |||||||| || ||||||||||  | ||||||||||||||||||||| |||||||||||||| || || |||||||| |||||      
T  8010353 gacatcacctccggtgggtacccagcctgctgctgcatcacatactgagactgctgaagatatgtattagcacggttggttgcgtccagcatgttccatt 8010254  T
Q  118 tatgggtatggcactggtattgccattgagtgtagctggcaaagtcaaa 166  Q
    |||||||||||||||||||||||||||||| | |||| | |||||||||    
T  8010253 tatgggtatggcactggtattgccattgagcgaagcttgaaaagtcaaa 8010205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 24 - 214
Target Start/End: Complemental strand, 6108 - 5918
Alignment:
Q  24 acctccggagggtaccctgcttgctgctgcactaaatactgagactgctgaagataagtattagcacggtttgtagcttccagcatattccaagtatggg 123  Q
    |||||||||||||||||||||||||| ||||  | ||| || |||||||| |  || || || || ||||| || ||| ||||||| |||||||| || |    
T  6108 acctccggagggtaccctgcttgctgttgcatcagatattgggactgctggaagtatgtgttggctcggttagtggctgccagcatgttccaagtgtgag 6009  T
Q  124 tatggcactggtattgccattgagtgtagctggcaaagtcaaaggtagttgtggttggcatctgaaatggttcggcccctgcttgtggatg 214  Q
    |||||||||| | ||||||||| | |||||||| |||||| |||| ||| |||| ||| |||||||||||||||| ||||| |||||||||    
T  6008 tatggcactgatgttgccattgtgcgtagctggaaaagtcgaaggcagtcgtgggtggaatctgaaatggttcggaccctggttgtggatg 5918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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