View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_389 (Length: 239)

Name: NF7829A_low_389
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_389
NF7829A_low_389
[»] chr4 (6 HSPs)
chr4 (14-214)||(34635865-34636065)
chr4 (120-153)||(6821045-6821078)
chr4 (120-153)||(19728782-19728815)
chr4 (121-153)||(17418299-17418331)
chr4 (123-153)||(3576628-3576658)
chr4 (121-153)||(18557649-18557681)
[»] chr6 (9 HSPs)
chr6 (59-208)||(24621935-24622083)
chr6 (99-153)||(7848049-7848103)
chr6 (104-153)||(22396767-22396816)
chr6 (121-153)||(14745278-14745310)
chr6 (121-151)||(31473698-31473728)
chr6 (121-153)||(19548074-19548106)
chr6 (121-153)||(27122155-27122187)
chr6 (99-151)||(31494902-31494954)
chr6 (99-151)||(31500288-31500340)
[»] chr7 (2 HSPs)
chr7 (114-214)||(41743857-41743956)
chr7 (121-153)||(16074828-16074860)
[»] chr2 (6 HSPs)
chr2 (179-214)||(18785430-18785465)
chr2 (118-150)||(18988136-18988168)
chr2 (121-153)||(23247572-23247604)
chr2 (127-162)||(16858381-16858416)
chr2 (121-150)||(35922772-35922801)
chr2 (121-153)||(23907462-23907494)
[»] scaffold1043 (1 HSPs)
scaffold1043 (121-153)||(1762-1794)
[»] scaffold0094 (1 HSPs)
scaffold0094 (121-153)||(5424-5456)
[»] scaffold0010 (1 HSPs)
scaffold0010 (121-153)||(141932-141964)
[»] chr8 (1 HSPs)
chr8 (121-153)||(17862581-17862613)
[»] scaffold0290 (1 HSPs)
scaffold0290 (118-153)||(14828-14863)
[»] scaffold0170 (1 HSPs)
scaffold0170 (123-153)||(16926-16956)
[»] scaffold0061 (1 HSPs)
scaffold0061 (121-153)||(18451-18483)
[»] chr5 (1 HSPs)
chr5 (117-153)||(13935344-13935380)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 214
Target Start/End: Complemental strand, 34636065 - 34635865
Alignment:
Q  14 acatcaggaagtatttccgtctcaatagtttgtacaatcatcgtctcacaccatttcataatatacaccaagtacaaacatcaccatttgtatgtatata 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636065 acatcaggaagtatttccgtctcaatagtttgtacaatcatcgtctcacaccatttcataatatacaccaagtacaaacatcaccatttgtatgtatata 34635966  T
Q  114 gacttcatcctaagacctatatgaatgtggtaccacaccttttcgtcatcattattgtttgtcagagatgtgttactggacttacattcgtcttcatttc 213  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34635965 gacttcatcctaagacctatataaatgtggtaccacaccttttcgtcatcattattgtttgtcagagatgtgttactggacttacattcgtcttcatttc 34635866  T
Q  214 a 214  Q
    |    
T  34635865 a 34635865  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 153
Target Start/End: Original strand, 6821045 - 6821078
Alignment:
Q  120 atcctaagacctatatgaatgtggtaccacacct 153  Q
    ||||||||||||||||||||||||||||||||||    
T  6821045 atcctaagacctatatgaatgtggtaccacacct 6821078  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 153
Target Start/End: Complemental strand, 19728815 - 19728782
Alignment:
Q  120 atcctaagacctatatgaatgtggtaccacacct 153  Q
    ||||||||||||||||||||||||||||||||||    
T  19728815 atcctaagacctatatgaatgtggtaccacacct 19728782  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 17418299 - 17418331
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  17418299 tcctaagacctatatgaatgtggtaccacacct 17418331  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 3576658 - 3576628
Alignment:
Q  123 ctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||    
T  3576658 ctaagacctatatgaatgtggtaccacacct 3576628  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 18557681 - 18557649
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||| ||||    
T  18557681 tcctaagacctatatgaatgtggtaccatacct 18557649  T

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Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 59 - 208
Target Start/End: Original strand, 24621935 - 24622083
Alignment:
Q  59 tcacaccatttcataatatacaccaagtacaaacatcaccatttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacaccttttcg 158  Q
    ||||||||||||| ||   ||||||||||||||||||| |  || |||| |||| |||| ||||||| ||| ||||||||||| |||||||||| | |||    
T  24621935 tcacaccatttcacaaataacaccaagtacaaacatcatcgcttatatgcatattgactccatcctatgacatatatgaatgtagtaccacacc-tatcg 24622033  T
Q  159 tcatcattattgtttgtcagagatgtgttactggacttacattcgtcttc 208  Q
    ||||||| | |  ||||||||||| |||||||||| ||||| ||||||||    
T  24622034 tcatcataaattgttgtcagagatatgttactggatttacactcgtcttc 24622083  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 7848049 - 7848103
Alignment:
Q  99 atttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacacct 153  Q
    |||| |||| ||||| |||  ||||||||||||||||||||||||||||||||||    
T  7848049 atttttatgcatataaactcaatcctaagacctatatgaatgtggtaccacacct 7848103  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 153
Target Start/End: Complemental strand, 22396816 - 22396767
Alignment:
Q  104 tatgtatatagacttcatcctaagacctatatgaatgtggtaccacacct 153  Q
    |||| |||| |||||  |||||||||||||||||||||||||||||||||    
T  22396816 tatgcatatggacttagtcctaagacctatatgaatgtggtaccacacct 22396767  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 14745278 - 14745310
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  14745278 tcctaagacctatatgaatgtggtaccacacct 14745310  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 151
Target Start/End: Complemental strand, 31473728 - 31473698
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacac 151  Q
    |||||||||||||||||||||||||||||||    
T  31473728 tcctaagacctatatgaatgtggtaccacac 31473698  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 19548106 - 19548074
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||| ||||    
T  19548106 tcctaagacctatatgaatgtggtaccatacct 19548074  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 27122187 - 27122155
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||| ||||    
T  27122187 tcctaagacctatatgaatgtggtaccatacct 27122155  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 31494954 - 31494902
Alignment:
Q  99 atttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacac 151  Q
    ||||||||| |||| ||||   |||||||| ||||||||||||||||||||||    
T  31494954 atttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacac 31494902  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 31500340 - 31500288
Alignment:
Q  99 atttgtatgtatatagacttcatcctaagacctatatgaatgtggtaccacac 151  Q
    ||||||||| |||| ||||   |||||||| ||||||||||||||||||||||    
T  31500340 atttgtatgcatatggactcagtcctaagatctatatgaatgtggtaccacac 31500288  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 114 - 214
Target Start/End: Original strand, 41743857 - 41743956
Alignment:
Q  114 gacttcatcctaagacctatatgaatgtggtaccacaccttttcgtcatcat-tattgtttgtcagagatgtgttactggacttacattcgtcttcattt 212  Q
    ||||||||| |||||| |||||||| |||||| ||||| | | ||||||||| |||||||  | ||||||||||||||||||||||||| ||||||||||    
T  41743857 gacttcatcttaagacatatatgaacgtggtatcacacatat-cgtcatcatatattgttgat-agagatgtgttactggacttacatttgtcttcattt 41743954  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 16074860 - 16074828
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||| ||||||||||||||||    
T  16074860 tcctaagacctatatgcatgtggtaccacacct 16074828  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 179 - 214
Target Start/End: Complemental strand, 18785465 - 18785430
Alignment:
Q  179 agatgtgttactggacttacattcgtcttcatttca 214  Q
    ||||||||||||||||||||||||||||||||||||    
T  18785465 agatgtgttactggacttacattcgtcttcatttca 18785430  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 150
Target Start/End: Complemental strand, 18988168 - 18988136
Alignment:
Q  118 tcatcctaagacctatatgaatgtggtaccaca 150  Q
    |||||||||||||||||||||||||||||||||    
T  18988168 tcatcctaagacctatatgaatgtggtaccaca 18988136  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 23247604 - 23247572
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  23247604 tcctaagacctatatgaatgtggtaccacacct 23247572  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 16858381 - 16858416
Alignment:
Q  127 gacctatatgaatgtggtaccacaccttttcgtcat 162  Q
    ||||||||||||||||||||||||||| ||||||||    
T  16858381 gacctatatgaatgtggtaccacacctattcgtcat 16858416  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 150
Target Start/End: Complemental strand, 35922801 - 35922772
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccaca 150  Q
    ||||||||||||||||||||||||||||||    
T  35922801 tcctaagacctatatgaatgtggtaccaca 35922772  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 23907462 - 23907494
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    ||||||||||||||||||||| |||||||||||    
T  23907462 tcctaagacctatatgaatgtagtaccacacct 23907494  T

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Target: scaffold1043 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 1794 - 1762
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  1794 tcctaagacctatatgaatgtggtaccacacct 1762  T

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Target: scaffold0094 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 5456 - 5424
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  5456 tcctaagacctatatgaatgtggtaccacacct 5424  T

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Target: scaffold0010 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Original strand, 141932 - 141964
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  141932 tcctaagacctatatgaatgtggtaccacacct 141964  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 17862613 - 17862581
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||||    
T  17862613 tcctaagacctatatgaatgtggtaccacacct 17862581  T

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Target: scaffold0290 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 153
Target Start/End: Complemental strand, 14863 - 14828
Alignment:
Q  118 tcatcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||| |||||||||||    
T  14863 tcatcctaagacctatatgaatgttgtaccacacct 14828  T

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Target: scaffold0170 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 16926 - 16956
Alignment:
Q  123 ctaagacctatatgaatgtggtaccacacct 153  Q
    |||||||||||||||||||||||||||||||    
T  16926 ctaagacctatatgaatgtggtaccacacct 16956  T

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Target: scaffold0061 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 153
Target Start/End: Complemental strand, 18483 - 18451
Alignment:
Q  121 tcctaagacctatatgaatgtggtaccacacct 153  Q
    ||||||||||||||||||||| |||||||||||    
T  18483 tcctaagacctatatgaatgtcgtaccacacct 18451  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 13935344 - 13935380
Alignment:
Q  117 ttcatcctaagacctatatgaatgtggtaccacacct 153  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  13935344 ttcatcgtaagatctatatgaatgtggtaccacacct 13935380  T

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