View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_39 (Length: 430)
Name: NF7829A_low_39
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_39 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 34444731 - 34444314
Alignment:
| Q |
13 |
acatcatcaatttgaagtgttggtgctaaaaaatttcagttgggtagacagtgtaattcgcatacgaaattttagcaaagaaaacatgtcatacagtctt |
112 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34444731 |
acatcatcaatctgaagtgttggtgctaaaaaatttcagttgggtagacggtgtaattcgcatacgaaattttagcaaagaaaacatgtcataccgtctt |
34444632 |
T |
|
| Q |
113 |
cttcagatgttggaagtgcatcatgttgtcttactacataaatctccactgcattaagaataggtggaagcgttgagtcttcagtttttcgtatcgaaat |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444631 |
cttcagatgttggaagtgcatcatgttgtcttactacataaatctccactgcattaagaataggtggaagcgttgagtcttcagtttttcgtatcgaaat |
34444532 |
T |
|
| Q |
213 |
tcgatgttcatttgcaaccaacgactttgaattaaacacagtggttgattgcaagtattttggtattgttgagttaatcaaaggagaaccattccaagat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444531 |
tcgatgttcatttgcaaccaacgactttgaattaaacacagtggttgattgcaagtattttggtattgttgagttaatcaaaggagaaccattccaagat |
34444432 |
T |
|
| Q |
313 |
acattgaattttctcaactgagttttgttaagtttctcaaattcagcaaagtacaagtagacattgaatttcaaatttggatcatctgaaatccaagaaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34444431 |
acattgaattttctcaactgagttttgttaagtttctcaaattcagcaaagtacaagtagacattgaatttcaaatttggatcatctgaaatccaagaaa |
34444332 |
T |
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| Q |
413 |
attccatactatcattct |
430 |
Q |
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| T |
34444331 |
aatccaaactaacattct |
34444314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 95 - 430
Target Start/End: Complemental strand, 34437902 - 34437567
Alignment:
| Q |
95 |
aacatgtcatacagtcttcttcagatgttggaagtgcatcatgttgtcttactacataaatctccactgcattaagaataggtggaagcgttgagtcttc |
194 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |
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| T |
34437902 |
aacatgtcataccatcttcttcagatgttggaagtgcatcaagttgtcttactacataaatctccactgcattaagtataggtggaagagttgaatcttc |
34437803 |
T |
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| Q |
195 |
agtttttcgtatcgaaattcgatgttcatttgcaaccaacgactttgaattaaacacagtggttgattgcaagtattttggtattgttgagttaatcaaa |
294 |
Q |
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||||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||| |||||||| |||| ||||||||| |
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| T |
34437802 |
agttttttgtattgaaattcgatgttcatttgcgaccaacgacttcgaattaaacacagtggttgcttgcaagtatcttggtattattgatttaatcaaa |
34437703 |
T |
|
| Q |
295 |
ggagaaccattccaagatacattgaattttctcaactgagttttgttaagtttctcaaattcagcaaagtacaagtagacattgaatttcaaatttggat |
394 |
Q |
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|||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
34437702 |
ggagaaccattccaagatacgtcgaattctctcaactgagttttgttaagtttctccacttctgcaaagtacaagtagacattgaatttcaaatttcgat |
34437603 |
T |
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| Q |
395 |
catctgaaatccaagaaaattccatactatcattct |
430 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
34437602 |
catctgaaatccaagaaaattccaaactatcattct |
34437567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 21381102 - 21381002
Alignment:
| Q |
17 |
catcaatttgaagtgttggtgctaaaaaatttcagttgggtagacagtgtaattcgcatacgaaattttagcaaagaaaacatgtcatacagtcttcttc |
116 |
Q |
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||||||| |||||||| ||||||| || ||||| | |||||| |||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
21381102 |
catcaatctgaagtgtcggtgctataatttttcactagggtaggcagtgtaattcgcatatgaaaccttagcaaagaaaacatgtcataccatcttcttc |
21381003 |
T |
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| Q |
117 |
a |
117 |
Q |
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| T |
21381002 |
a |
21381002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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