View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_391 (Length: 238)
Name: NF7829A_low_391
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_391 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 34093069 - 34092836
Alignment:
| Q |
5 |
atgagatggacatcatcacatatacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
104 |
Q |
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| T |
34093069 |
atgaggtggacatcatcacatttacctaacctaatgcctcttcttcatttttctagctaccaatgtctttttcatctttgaattaatatatgctctaata |
34092970 |
T |
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| Q |
105 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgtttagccaattattcaatatcaa |
204 |
Q |
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| T |
34092969 |
gccaacgataatgatttgcatacaatgtaattgtttcttttatttcaagtggttgtgtatatataatgtgagatttgttttgccaattattcaatatcaa |
34092870 |
T |
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| Q |
205 |
tctgactttggcaaagtttctcattgagaaaagt |
238 |
Q |
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||||||||||||||||||||| |||||||||||| |
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| T |
34092869 |
tctgactttggcaaagtttcttattgagaaaagt |
34092836 |
T |
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