View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_394 (Length: 237)
Name: NF7829A_low_394
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_394 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 8597646 - 8597468
Alignment:
| Q |
1 |
gtaaacctaaccttgcgtgacattacttacatcaaatggaaaaacttaacaagtaaaatttgtggtaaatgtaaactccagagcaagtggaaatgataaa |
100 |
Q |
| |
|
|||||||||||||| | ||||| ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8597646 |
gtaaacctaaccttacttgacagtactttcatcaagtggaaaaagttaacaagtaaaatttgtggtaaatgtaaactccagagctagtggaaatgataac |
8597547 |
T |
|
| Q |
101 |
cctccttattaggg-tggaatgattcgagtcgattcaaattcttctaagctcgactaaataagaattggttcaactcaa |
178 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
8597546 |
cctccttattagggctggaatgattcgagtcgattcaaattcttctaagctcgactagataagaattggttcagctcaa |
8597468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 8597432 - 8597376
Alignment:
| Q |
174 |
ctcaagttcagctcgttttaggttcacaagcaactcgattcatctcgtttacgttca |
230 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
8597432 |
ctcaagtttagctcgttttaagttcacaagcaactcgattcatctcgtttacgttca |
8597376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 10493481 - 10493526
Alignment:
| Q |
169 |
ttcaactcaagttcagctcgttttaggttcacaagcaactcgattc |
214 |
Q |
| |
|
|||||||||||||| |||||||| | |||||| ||||||||||||| |
|
|
| T |
10493481 |
ttcaactcaagttcggctcgtttaaagttcacgagcaactcgattc |
10493526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University