View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_4 (Length: 632)
Name: NF7829A_low_4
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 1 - 632
Target Start/End: Original strand, 33176953 - 33177594
Alignment:
| Q |
1 |
cttgaatccagaaaaaactaaatccaatatttttaaaccaaaaattgcaagagaaaattcgtgaagagcccatggtggtgcagaataatagagtcctaaa |
100 |
Q |
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|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| || |
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| T |
33176953 |
cttgaacccagaaacaactaaatccaatatttttaaaccaaaaattgcaagagaaaattcgtgaagagcccatggcggtgccgaataatagagtcctgaa |
33177052 |
T |
|
| Q |
101 |
aacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatggaaaaacactccgatcagaactccttg |
200 |
Q |
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| |||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
33177053 |
atcaagctcaagggaacgagatccgccaaggctttaaataacaaataaagtttactagaggatcacaacaatggaaaaacactccgattagaactccttg |
33177152 |
T |
|
| Q |
201 |
gatgaaatagtagtgagtagtcaataggaa-cccttggtgaacgaccccgagaggtgtttagaggtggagctgcgctgataagactgcacaccgccattt |
299 |
Q |
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|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||| | ||| ||||||||||||||||||||||||| |
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| T |
33177153 |
gatgaaatagtagtgagtagtcgataggaaccccttggtgaacgaccccgagaggtgtttaaaggtggtgttgcactgataagactgcacaccgccattt |
33177252 |
T |
|
| Q |
300 |
ttaatgagggaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatcaa-gtattc---ataga |
395 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
33177253 |
ttaatgaggaaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatcaacgtattcataataga |
33177352 |
T |
|
| Q |
396 |
tcataattaataggaaacttgtgtttatccaacaaaaaatatagaggagtttcgaagaatcctaatcatcg-taaacatctaatcaaacaaaccatacat |
494 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| | |||| |
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| T |
33177353 |
tcataattaataggaaacttgtgttaatctaacaaaaaatatagaggagttttgaagaatcctaatcatcgttaaacatctaatcaaacaaactaaacat |
33177452 |
T |
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| Q |
495 |
atttgtctaatcaatcaaaacttgcaaacatccttaaatttatagtctttaataataagttttgtaaattttatagtagaaaacaacaatcactgtggag |
594 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
33177453 |
atttgtctaatcaataaaaacttgcaaacatccttaaatttatagtctttaataataagttttgtaaattttatagtagaaaacaacaatcaatatggag |
33177552 |
T |
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| Q |
595 |
acgatacacttac----ttattacttgaaacagtttgatgca |
632 |
Q |
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| T |
33177553 |
acgatacacttactaatttattacttgaaacaatttggtgca |
33177594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 2e-69; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 342 - 608
Target Start/End: Original strand, 23357200 - 23357469
Alignment:
| Q |
342 |
tgagtatgaagagagagaacataggatacatgttcttaatcaa-gtattcatagatcataattaataggaaacttgtgtttatccaacaaaaaatataga |
440 |
Q |
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||||||||||||||||||| | |||||||||||||||||| || ||||| |||| ||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
23357200 |
tgagtatgaagagagagaagagaggatacatgttcttaataaaagtatttataggtcacaattaataggaaacttgtgttaatacaacaaaaaatataga |
23357299 |
T |
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| Q |
441 |
ggagtttcgaagaatcctaatcatcgt-aaacatctaa-tcaaacaaaccatacatatttgtctaatcaatcaaaacttgcaaacatccttaaatttata |
538 |
Q |
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|||| |||||||||| ||||||| || |||||||||| ||||||||| || |||||||||||| |||||| |||||||| ||||| ||||||||||| | |
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| T |
23357300 |
ggagattcgaagaattctaatcactgttaaacatctaaatcaaacaaatcagacatatttgtctgatcaataaaaacttgtaaacacccttaaatttaaa |
23357399 |
T |
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| Q |
539 |
gtctttaataataagttttgtaaattttatagtagaaaacaacaatcactgtggagacgatacacttact |
608 |
Q |
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| T |
23357400 |
gtctttaataataagatttgtaaatttattaatagaaaacaacagtctatatggtgacgatacacttact |
23357469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 302 - 608
Target Start/End: Complemental strand, 23340747 - 23340439
Alignment:
| Q |
302 |
aatgagggaaggatgaaaggttgagcttttgtcgcgcggctgagtatgaagagagagaacataggatacatgttcttaatcaa-gtattcatagatcata |
400 |
Q |
| |
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||||||| || |||||| || |||||||| || | ||||||||||| |||||||||| | | |||||||||||||| |||| ||||||||| ||||| |
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| T |
23340747 |
aatgaggaaatgatgaagggatgagctttggtggatcggctgagtat--agagagagaagagatgatacatgttcttagtcaaagtattcataagtcata |
23340650 |
T |
|
| Q |
401 |
attaataggaaacttgtgtttatccaacaaaaaatatagaggagtttcgaagaatcctaatcatcg-taaacatctaatcaaacaaaccatacatatttg |
499 |
Q |
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|||||| ||||| ||||||| ||||||||||||| |||||||||||| |||||||| |||||| || |||||||||||| ||| |||| | | ||||||| |
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| T |
23340649 |
attaatcggaaatttgtgttaatccaacaaaaaacatagaggagttttgaagaatcataatcaccgttaaacatctaattaaaaaaactaaatatatttg |
23340550 |
T |
|
| Q |
500 |
tctaatcaatcaaaacttgcaaacatccttaaatttatagtctt--taataataagttttgtaaattttatagtagaaaacaacaatcactgtggagacg |
597 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||| || |||||||||||||| |||||||| ||||||||||||| |||| ||||||||||| |
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| T |
23340549 |
tctaatcaatcaaaacatgcaaacatcctttaatttatagatttaataataataagttttataaattttctagtagaaaacaataatctctgtggagacg |
23340450 |
T |
|
| Q |
598 |
atacacttact |
608 |
Q |
| |
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|||||| |||| |
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| T |
23340449 |
atacacatact |
23340439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 99 - 299
Target Start/End: Original strand, 23356790 - 23356992
Alignment:
| Q |
99 |
aaaacaagctcaagggaaagaggtccgcagaggctttaaataacaaataaagtttactagaggatcacaacaatg-gaaaaacactccgatcagaactcc |
197 |
Q |
| |
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|||||||||||||| ||| |||| |||| ||||| ||||| |||||||||||||||||||||| |||||||| | ||||||||||||||||| || || |
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| T |
23356790 |
aaaacaagctcaagtgaacgaggaccgcgaaggctctaaatcacaaataaagtttactagaggaccacaacaaggacaaaaacactccgatcagtacccc |
23356889 |
T |
|
| Q |
198 |
ttggatgaaatagtagtgagtagtcaataggaac-ccttggtgaacgaccccgagaggtgtttagaggtggagctgcgctgataagactgcacaccgcca |
296 |
Q |
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|||||||||||||||||||| |||| || ||||| |||||||||| |||| ||||||||||||| ||| | |||||||||||| ||||||||| ||| |
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| T |
23356890 |
ttggatgaaatagtagtgagaagtctattggaactccttggtgaatgacctcgagaggtgtttaagggtaatgttgcgctgataagcctgcacaccacca |
23356989 |
T |
|
| Q |
297 |
ttt |
299 |
Q |
| |
|
||| |
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|
| T |
23356990 |
ttt |
23356992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 526 - 586
Target Start/End: Original strand, 20039767 - 20039827
Alignment:
| Q |
526 |
ccttaaatttatagtctttaataataagttttgtaaattttatagtagaaaacaacaatca |
586 |
Q |
| |
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||||||||||||||| |||||| |||||||| ||||||| || |||||||||||||||| |
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| T |
20039767 |
ccttaaatttatagtttttaattataagtttagtaaattgcctaatagaaaacaacaatca |
20039827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 23356710 - 23356753
Alignment:
| Q |
1 |
cttgaatccagaaaaaactaaatccaatatttttaaaccaaaaa |
44 |
Q |
| |
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|||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
23356710 |
cttgaatctagaaacaaccaaatccaatatttttaaaccaaaaa |
23356753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 505 - 549
Target Start/End: Complemental strand, 23593157 - 23593113
Alignment:
| Q |
505 |
tcaatcaaaacttgcaaacatccttaaatttatagtctttaataa |
549 |
Q |
| |
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||||||||| |||| ||| | |||||||||||||||||||||||| |
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| T |
23593157 |
tcaatcaaagcttgtaaaaacccttaaatttatagtctttaataa |
23593113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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