View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_40 (Length: 428)
Name: NF7829A_low_40
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_40 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 42 - 420
Target Start/End: Complemental strand, 10996404 - 10996026
Alignment:
| Q |
42 |
tgtgctcatggccaaagatgtgccctgcagtttaaacaagttctgccataatccacttgtaaaaaccttatctctatttcaaacaatggacttgggaatg |
141 |
Q |
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| T |
10996404 |
tgtgctcatggccaaagatgtgccctgcagtttaaacaagttctgccagaatccacttgtaaaaaccttgtctctatttgaaacaatggacttgggaatg |
10996305 |
T |
|
| Q |
142 |
ccatgtagttttgcaatgttattcatgaatgcttcagctacagactttgagtaatctgatttcatagccacaaaatggctatattttgtcagcctgtcta |
241 |
Q |
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| T |
10996304 |
ccatgtagtttttcagtgttattcatgaatgcttcggctacagactttgagtaatctgatttaatagccacaaaatggctatattttgtcagcctatcta |
10996205 |
T |
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| Q |
242 |
ttactaccaaaattatggtaaatccaaaagaagtaggtagcccagttataaagtccattgcaatatcttcctatacctggtttggtattggaagaggttg |
341 |
Q |
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| T |
10996204 |
ttactaccgtaatcacggtaaatccaaaagaagtaggtagcccagttataaagtccattgcaatatcttcccatacctggtttggtattggaagaggttg |
10996105 |
T |
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| Q |
342 |
aagcaacccaactggtgatgtgttaattttcttcgcatgttggcatattacacattgttgtacgtactctttgatgtcc |
420 |
Q |
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| T |
10996104 |
aagcaacccagctggtgatgtcttaattgtcttggcttgttggcatattacacattgttgtacgtactccttgatgtcc |
10996026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 7666379 - 7666262
Alignment:
| Q |
31 |
gggtggtaggctgtgctcatggccaaagatgtgccctgcagtttaaacaagttctgccataatccacttgtaaaaaccttatctctatttcaaacaatgg |
130 |
Q |
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| T |
7666379 |
gggtggtatgctgaactcattgacaaagtagtgccctgcaactcaaacaactgctgccaaaatttacttgtaaaaactttatctctatctgacacaatgg |
7666280 |
T |
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| Q |
131 |
acttgggaatgccatgta |
148 |
Q |
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|||| || |||||||||| |
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| T |
7666279 |
acttaggtatgccatgta |
7666262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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