View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_407 (Length: 235)

Name: NF7829A_low_407
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_407
NF7829A_low_407
[»] chr5 (2 HSPs)
chr5 (1-232)||(39184744-39184975)
chr5 (1-135)||(8730292-8730424)
[»] chr1 (4 HSPs)
chr1 (1-146)||(42373538-42373682)
chr1 (26-110)||(17032909-17032996)
chr1 (38-150)||(19597952-19598064)
chr1 (80-148)||(41919898-41919966)
[»] chr4 (2 HSPs)
chr4 (37-154)||(16501182-16501300)
chr4 (80-148)||(30963879-30963947)
[»] chr2 (4 HSPs)
chr2 (29-155)||(31902910-31903036)
chr2 (29-184)||(39339357-39339512)
chr2 (1-135)||(25505483-25505615)
chr2 (27-140)||(22886011-22886124)
[»] chr8 (4 HSPs)
chr8 (1-153)||(9519052-9519205)
chr8 (86-148)||(34866640-34866702)
chr8 (61-140)||(10551752-10551832)
chr8 (80-148)||(34389590-34389658)
[»] chr3 (4 HSPs)
chr3 (16-112)||(25595121-25595217)
chr3 (29-150)||(17501759-17501880)
chr3 (1-140)||(5555991-5556132)
chr3 (39-137)||(1653452-1653550)
[»] chr7 (6 HSPs)
chr7 (3-148)||(37792747-37792893)
chr7 (86-148)||(38484991-38485053)
chr7 (29-184)||(47326396-47326551)
chr7 (86-155)||(3420242-3420311)
chr7 (37-140)||(12480298-12480402)
chr7 (80-148)||(38305676-38305744)
[»] chr6 (1 HSPs)
chr6 (37-148)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 39184744 - 39184975
Alignment:
Q  1 atacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  39184744 atacccacaagccaacgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaacac 39184843  T
Q  101 aactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccgg 200  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39184844 aactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccgg 39184943  T
Q  201 agtaaacaaccaaccccattaacctgcggaac 232  Q
    ||||||||||||||||||| ||||||||||||    
T  39184944 agtaaacaaccaaccccatgaacctgcggaac 39184975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 8730424 - 8730292
Alignment:
Q  1 atacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacac 100  Q
    |||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |      
T  8730424 atacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagcca 8730327  T
Q  101 aactacaaaacatgggcaacgacgccagtttgaag 135  Q
    ||| |||||||| ||||| |||||||||| |||||    
T  8730326 aacaacaaaacacgggcagcgacgccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 42373682 - 42373538
Alignment:
Q  1 atacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacac 100  Q
    |||||||||| |||| ||||||| ||||||||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| |||||||||||||||||    
T  42373682 atacccacaa-ccaaagatagagacaaaactacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacac 42373584  T
Q  101 aactacaaaacatgggcaacgacgccagtttgaagcggaatcacaa 146  Q
    |||| ||||||| |||||||||| || |||||||||||||||||||    
T  42373583 aacttcaaaacacgggcaacgacaccggtttgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 17032996 - 17032909
Alignment:
Q  26 aaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactacaaaa 110  Q
    |||||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| ||||||    
T  17032996 aaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaa 17032909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 150
Target Start/End: Complemental strand, 19598064 - 19597952
Alignment:
Q  38 ccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 136  Q
    ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | ||||||| ||||| |||| ||| |||| ||||||||||||| || |||||     
T  19598064 ccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaacgacgccggtctgaagt 19597966  T
Q  137 ggaatcacaaccta 150  Q
    |||| |||||||||    
T  19597965 ggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  80 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  37 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 135  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  136 cggaatcacaacctaaatc 154  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  80 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  29 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 127  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  128 gtttgaagcggaatcacaacctaaatca 155  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  29 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 127  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  128 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 184  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 25505483 - 25505615
Alignment:
Q  1 atacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacac 100  Q
    |||||||| | |||||||||||| || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |      
T  25505483 atacccaccaaccaacgatagagacagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagcca 25505580  T
Q  101 aactacaaaacatgggcaacgacgccagtttgaag 135  Q
    ||| |||||||| ||||| |||||||||| |||||    
T  25505581 aacaacaaaacacgggcagcgacgccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 22886011 - 22886124
Alignment:
Q  27 aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgc 125  Q
    |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||||||    
T  22886011 aaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcgacgc 22886109  T
Q  126 cagtttgaagcggaa 140  Q
    |||| ||||||||||    
T  22886110 cagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  1 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 98  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  99 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 153  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 148
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  86 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 140
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  61 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 140  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  80 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 112
Target Start/End: Original strand, 25595121 - 25595217
Alignment:
Q  16 cgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 112  Q
    |||||||| | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595121 cgatagagacgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 150
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  29 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 127  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  128 gtttgaagcggaatcacaaccta 150  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 5556132 - 5555991
Alignment:
Q  1 atacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatcta-taggaagacgaaac 98  Q
    |||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||| ||||||||| |  ||||||||| |    
T  5556132 atacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaaacacatatctattttgaagacgaagc 5556033  T
Q  99 acaactacaaaacatgggcaacgacgccagtttgaagcggaa 140  Q
     |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556032 ccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 137
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  39 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 136  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 148
Target Start/End: Complemental strand, 37792893 - 37792747
Alignment:
Q  3 acccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacac 100  Q
    |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| | || |||| ||||| |    
T  37792893 acccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaagagaaagatgaaaccc 37792795  T
Q  101 aactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    |||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792794 aacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 86 - 148
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  86 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 184
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  29 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 127  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  128 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 184  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  86 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 155  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  37 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 134  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  135 gcggaa 140  Q
    | ||||    
T  12480303 gtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  80 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 148  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  37 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 135  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  136 cggaatcacaacc 148  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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