View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_408 (Length: 235)
Name: NF7829A_low_408
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_408 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 229
Target Start/End: Original strand, 33262054 - 33262239
Alignment:
| Q |
44 |
ttgcaaccacagagtgccatgttggaagggccagcaattagtcatctgcaaccacagactgccatattggaggggtcaacaatgactagtttgcaaccgc |
143 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262054 |
ttgctaccacagactgccatgttggaagggccatcaattagtaatctgcaaccacgaactgccatattggaggggtcaacaatgactagtttgcaaccgc |
33262153 |
T |
|
| Q |
144 |
agaatgccacattgcaagggccagcaagtctgcctttcaacatcccaacttcagaagagctgagctcaatgattttgggtcattca |
229 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33262154 |
agaatgccacactgcaagggccaacaagtctgcctttcaacatcccaatttcagaagagctgagctcaatgattttgggtcattca |
33262239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 33261974 - 33262079
Alignment:
| Q |
9 |
agagagcgatattgcaagggccagcgatgactgagttgcaaccacagagtgccatgttggaagggccagcaattagtcatctgcaaccacagactgccat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||| |||| ||| || ||| ||||||||||||||| |
|
|
| T |
33261974 |
agagagcgatattgcaagggccagcgatgactgagttggaaccacagagtgcttcattccatgggccaacaataagtaatttgctaccacagactgccat |
33262073 |
T |
|
| Q |
109 |
attgga |
114 |
Q |
| |
|
||||| |
|
|
| T |
33262074 |
gttgga |
33262079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University