View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_41 (Length: 424)
Name: NF7829A_low_41
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_41 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 48484788 - 48484384
Alignment:
| Q |
19 |
aaacatagtgtgaaagtagaaggcacaatgcaaccactaataaaatgggtatgtgtcatatcttgctagattaatatgtgacaaatctttcttattattc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48484788 |
aaacatagtgtgaaagtagaaggcacaatgcaaccactaataaaatgggtatgtgtcatatcttgctagattaatatgtgacaaatctttcttattattc |
48484689 |
T |
|
| Q |
119 |
tcactttaagtacttttatgctgtctgcatcacnnnnnnnnccccaaacttctccaaatttgaagtatcaaagatatagtcctgtagtgttgtgtgtacc |
218 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
48484688 |
tcacttgaagtacttttatgctgtctgcatcacttttttt-ccccaaacttctccaaatttgaagtatcaaagatatagtcctgcagtgttgtgtgtacc |
48484590 |
T |
|
| Q |
219 |
gtgtcttcatatctccataatacttctgcgcttctttctcatttttgaaataacaaaacaaatttcttcagatcacggaacacaatccccaagctggaat |
318 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48484589 |
gtgtcttcatatctccataatatttctgcgcttctttctcatttttgaaataacaaaacaaatttcttcagatcacggaacacaatccccaagctggaat |
48484490 |
T |
|
| Q |
319 |
tcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaacttttacatactgaaacttccatttcctgtacat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
48484489 |
tcccatgaagttaaatcagaaacaggtgttttcctttttgcaaggtaagcatgcatttcatatgaacttttacatactgaaacttccatttcttgtacat |
48484390 |
T |
|
| Q |
419 |
gatcag |
424 |
Q |
| |
|
|||||| |
|
|
| T |
48484389 |
gatcag |
48484384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University