View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_412 (Length: 234)
Name: NF7829A_low_412
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_412 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 44789549 - 44789429
Alignment:
| Q |
96 |
tcaaagctagtagttaaatttactaaagagtttgtcttagatctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctc-a |
194 |
Q |
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| T |
44789549 |
tcaaagctaatagataaatttactcaagagtttgtcttagatctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaa |
44789450 |
T |
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| Q |
195 |
atgagcataccctcacgttta |
215 |
Q |
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| T |
44789449 |
atgagcataccctcacgttta |
44789429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 44797944 - 44797865
Alignment:
| Q |
136 |
atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgttta |
215 |
Q |
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| T |
44797944 |
atctaatcttgcgcgccctgcgattggatctcattgaacctggtcgtgtcgtcttctcaatgaacatacccccacgttta |
44797865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 44793056 - 44792977
Alignment:
| Q |
136 |
atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgttta |
215 |
Q |
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| T |
44793056 |
atctaaccttgcgcggcctacgattggatcgcattgaacctggtcgtgtcgtcttctcaatgaacatacctccacgttta |
44792977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Complemental strand, 44801334 - 44801260
Alignment:
| Q |
141 |
atcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgttta |
215 |
Q |
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| T |
44801334 |
atcttgcgtggcctacgattggatctcattgagcctggccatgtcgttttctcaatgaacatacctccacgttta |
44801260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 136 - 215
Target Start/End: Complemental strand, 44805831 - 44805752
Alignment:
| Q |
136 |
atctaatcttgcgtggcctacgattggatctcattaagcctggtcgtgtcctcttctcaatgagcataccctcacgttta |
215 |
Q |
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| T |
44805831 |
atctaatcttgcgtggcctacgcttcgatgtcattgagcctggccgtgtcattttcacaatgaacatacccccacgttta |
44805752 |
T |
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