View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_413 (Length: 234)

Name: NF7829A_low_413
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_413
NF7829A_low_413
[»] chr6 (15 HSPs)
chr6 (16-210)||(24767426-24767620)
chr6 (16-211)||(18651236-18651431)
chr6 (16-210)||(2553581-2553775)
chr6 (39-210)||(12734069-12734240)
chr6 (16-183)||(15958815-15958982)
chr6 (16-109)||(21168244-21168337)
chr6 (41-129)||(17606361-17606449)
chr6 (42-143)||(17579109-17579210)
chr6 (42-143)||(17573683-17573784)
chr6 (16-133)||(21630109-21630226)
chr6 (16-129)||(10577251-10577364)
chr6 (16-105)||(20883035-20883124)
chr6 (37-176)||(13937678-13937817)
chr6 (16-210)||(14372993-14373187)
chr6 (16-117)||(33185473-33185574)
[»] chr7 (10 HSPs)
chr7 (16-210)||(47876927-47877121)
chr7 (16-210)||(235439-235635)
chr7 (16-210)||(11277254-11277448)
chr7 (16-210)||(37919488-37919682)
chr7 (16-210)||(17720579-17720773)
chr7 (16-210)||(29967919-29968113)
chr7 (16-210)||(4938130-4938324)
chr7 (41-129)||(18532653-18532741)
chr7 (41-105)||(25619508-25619572)
chr7 (41-105)||(37254807-37254871)
[»] chr5 (22 HSPs)
chr5 (16-211)||(28535677-28535872)
chr5 (16-211)||(35983793-35983988)
chr5 (16-211)||(42928074-42928269)
chr5 (17-210)||(23238328-23238521)
chr5 (16-210)||(30732316-30732510)
chr5 (16-210)||(12825143-12825337)
chr5 (32-210)||(8227970-8228148)
chr5 (16-210)||(27117163-27117357)
chr5 (16-210)||(42513664-42513858)
chr5 (46-211)||(19255154-19255320)
chr5 (16-154)||(31641512-31641649)
chr5 (41-143)||(25857451-25857553)
chr5 (16-133)||(27767063-27767180)
chr5 (16-143)||(8300184-8300311)
chr5 (16-129)||(33385376-33385489)
chr5 (100-211)||(12820035-12820146)
chr5 (16-129)||(10776789-10776903)
chr5 (16-147)||(26072899-26073030)
chr5 (37-176)||(33169636-33169775)
chr5 (16-105)||(18359094-18359183)
chr5 (18-183)||(27165956-27166121)
chr5 (44-153)||(18089791-18089900)
[»] chr4 (16 HSPs)
chr4 (16-211)||(7403856-7404051)
chr4 (16-210)||(1828542-1828736)
chr4 (16-210)||(15740165-15740359)
chr4 (16-210)||(19755208-19755405)
chr4 (16-210)||(19784401-19784598)
chr4 (16-210)||(47685897-47686091)
chr4 (16-210)||(13270893-13271087)
chr4 (16-210)||(23642593-23642787)
chr4 (16-153)||(47418805-47418942)
chr4 (16-147)||(11587200-11587331)
chr4 (41-129)||(45472736-45472824)
chr4 (42-150)||(55725714-55725822)
chr4 (16-129)||(12697838-12697951)
chr4 (41-108)||(8361146-8361213)
chr4 (42-105)||(20002774-20002837)
chr4 (37-172)||(46145657-46145792)
[»] chr3 (22 HSPs)
chr3 (16-210)||(34332817-34333011)
chr3 (16-211)||(40930530-40930725)
chr3 (16-209)||(19920231-19920424)
chr3 (16-210)||(2364221-2364415)
chr3 (16-210)||(7312720-7312914)
chr3 (16-153)||(10323573-10323710)
chr3 (51-196)||(7032276-7032421)
chr3 (36-183)||(26771011-26771158)
chr3 (16-129)||(29523747-29523860)
chr3 (16-129)||(11203844-11203957)
chr3 (16-180)||(15312557-15312721)
chr3 (16-174)||(2755822-2755980)
chr3 (16-129)||(12342228-12342340)
chr3 (32-181)||(17097894-17098043)
chr3 (16-129)||(33496572-33496685)
chr3 (41-105)||(35214398-35214462)
chr3 (37-176)||(963186-963325)
chr3 (45-129)||(36801106-36801190)
chr3 (52-143)||(7031055-7031146)
chr3 (41-99)||(19890733-19890791)
chr3 (37-170)||(3140836-3140969)
chr3 (29-150)||(16178952-16179073)
[»] chr8 (16 HSPs)
chr8 (16-210)||(13396332-13396526)
chr8 (16-210)||(41665371-41665565)
chr8 (16-211)||(9922544-9922739)
chr8 (20-210)||(32266508-32266698)
chr8 (16-210)||(7924330-7924524)
chr8 (16-210)||(8299747-8299941)
chr8 (16-210)||(172047-172241)
chr8 (16-143)||(20824307-20824434)
chr8 (16-210)||(13200067-13200261)
chr8 (41-129)||(17699507-17699595)
chr8 (16-129)||(37434157-37434270)
chr8 (16-107)||(2170389-2170480)
chr8 (64-182)||(34137013-34137131)
chr8 (46-181)||(5181643-5181778)
chr8 (41-108)||(43270496-43270563)
chr8 (77-210)||(2529830-2529963)
[»] chr2 (9 HSPs)
chr2 (16-211)||(41206959-41207154)
chr2 (16-210)||(4552113-4552307)
chr2 (41-210)||(15917598-15917767)
chr2 (46-183)||(17764994-17765131)
chr2 (42-210)||(12645480-12645648)
chr2 (16-210)||(28252664-28252858)
chr2 (41-103)||(10999978-11000040)
chr2 (41-129)||(14439777-14439865)
chr2 (16-104)||(38604376-38604464)
[»] chr1 (9 HSPs)
chr1 (16-210)||(51052424-51052618)
chr1 (16-210)||(11909107-11909301)
chr1 (16-170)||(35541033-35541187)
chr1 (16-210)||(6050547-6050741)
chr1 (41-143)||(16917836-16917938)
chr1 (41-106)||(43388415-43388480)
chr1 (16-210)||(47623079-47623271)
chr1 (16-92)||(28351776-28351852)
chr1 (41-105)||(37191237-37191301)
[»] scaffold0472 (1 HSPs)
scaffold0472 (16-210)||(3196-3390)
[»] scaffold0369 (1 HSPs)
scaffold0369 (16-210)||(11207-11401)
[»] scaffold0034 (1 HSPs)
scaffold0034 (16-210)||(105845-106039)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 24767426 - 24767620
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  24767426 gacatcacaggagcagccctagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgacgacttcttagg 24767525  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24767526 gatcggttacctacaaaaaataatttggcaaatcgtggcattttacctttggaggcgcggttgtgtgtttttggttgcgggaacgttgaagatgt 24767620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 18651236 - 18651431
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||    
T  18651236 gacatcacaggagcagccccagttagatcaaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcgacttctgagg 18651335  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||| ||||||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||| | ||| |||||||  ||||||||||||    
T  18651336 gatcggttacctacaaaaaataatttggaaaaccgtgggattttacctttggatgcgcggttgtgtgtctctggatgcgggaccgttgaagatgtc 18651431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 2553775 - 2553581
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||| ||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | |      
T  2553775 gacatcacaagagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaaa 2553676  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||| ||| || ||||| |||||||||||    
T  2553675 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagttgtgtgtttctggatgtgggaacgttgaagatgt 2553581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 12734240 - 12734069
Alignment:
Q  39 tacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataa 138  Q
    ||||||| |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||| |||||||||||||  |||    
T  12734240 tacatcataatatggatttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagggatcggttacctacaaaacttaa 12734141  T
Q  139 tttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||||| ||  ||||| ||| || || |||||| |||||| ||||||| | | || |||||||| ||||||||    
T  12734140 tttggtaacccgtggcattctatctctggaggagcggttatgtgtttctagatgtgggaatgtcgaagatgt 12734069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 183
Target Start/End: Original strand, 15958815 - 15958982
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || |  |||||||||| ||||||| ||||||| | |||||||||||||||| | ||||||||||| ||||||||||| ||| | |||    
T  15958815 gacatcacaggaacaacttcagttacatccaaatatgaagttaatatggcataaacaggttcctcttaaagtctctattcttgcttggcggcttttgagg 15958914  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgt 183  Q
    ||||| |||||||| |||   ||||||||||| | ||||||  | |||||||||| || |||||||||    
T  15958915 gatcatttacctacgaaagcaaatttggcaaaccatggtatcattcctttggaggtgcagttgtgtgt 15958982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 21168337 - 21168244
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgactt 109  Q
    ||||||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||| ||||||| |||||||| |||||| |||||    
T  21168337 gacatcacaggagcagccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtatctatcctagcttggagactt 21168244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 17606361 - 17606449
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 129  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||| ||||||||    
T  17606361 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcatttacctac 17606449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 17579109 - 17579210
Alignment:
Q  42 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 141  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  ||||||    
T  17579109 atcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaattt 17579208  T
Q  142 gg 143  Q
    ||    
T  17579209 gg 17579210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 42 - 143
Target Start/End: Original strand, 17573683 - 17573784
Alignment:
Q  42 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 141  Q
    ||||||||||||||||||||| |||||||||||||||| | ||||  ||||||||||||||||||||  | |||||||  |||||||| |||  ||||||    
T  17573683 atcaaaatatggagttaatttggcataaacaggttcctttaaaagattctatccttgcttggcgactgttgagggatcgcttacctactaaatctaattt 17573782  T
Q  142 gg 143  Q
    ||    
T  17573783 gg 17573784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 133
Target Start/End: Original strand, 21630109 - 21630226
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||| ||||||||| | ||||| |||||||||| |||||||||  | |||    
T  21630109 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaccaggttcctttaaaagtttctatccttgtttggcgactattgagg 21630208  T
Q  116 gatcagttacctacaaaa 133  Q
    ||||  ||||||||||||    
T  21630209 gatcgtttacctacaaaa 21630226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 10577251 - 10577364
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | ||||||||||| |||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||  | |||    
T  10577251 gacatcacaggaacaacctcatgttcatcaaaatatagagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagg 10577350  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  10577351 gatcgtttacctac 10577364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 20883035 - 20883124
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | ||||||| |||||||| | ||||| |||||||||||||||||    
T  20883035 gacatcacaggaacaaccacatgttcatcaaaatatggagttaatctggcataaataggttcctttaaaagtttctatccttgcttggcg 20883124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 13937817 - 13937678
Alignment:
Q  37 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 136  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  13937817 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 13937718  T
Q  137 aatttggcaaatcgtggtattttacctttggaggcgcggt 176  Q
    |||||||||| | ||||  | ||| ||||||||| |||||    
T  13937717 aatttggcaagttgtggggtcttatctttggaggagcggt 13937678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 14372993 - 14373187
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||| ||||| ||||| |||||||||     |||||| ||||||| |||||||||||| ||| | ||||| ||||| ||||||||||  ||| | |||    
T  14372993 gacatcccaggaacagcctcagttacattcttctatggatttaatttggcataaacaggtacctctaaaagtatctattcttgcttggcagcttttgagg 14373092  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
     |    |||||||| |||   ||||||||||| ||||| ||| |  || |||||| ||||||||||||||  ||||  ||| ||| |||||||||    
T  14373093 aacggcttacctacgaaaggaaatttggcaaaccgtggcattatttctatggaggggcggttgtgtgtttccggttatgggcatgatgaagatgt 14373187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 33185574 - 33185473
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||| ||||||| | ||| |||||| ||||  |||| ||||||| ||||||||| || ||| | |||||||||||  ||||||| ||| | ||||||    
T  33185574 gacatcataggagcatctccatttacattaaaacttggaattaatttggcataaacatgtccctctgaaagtctctatttttgcttgacgaatgcttagg 33185475  T
Q  116 ga 117  Q
    ||    
T  33185474 ga 33185473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 5e-80; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 47877121 - 47876927
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||     
T  47877121 gacatcacaggagcagccccagttacatcaaaatagggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgaga 47877022  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  47877021 gatcagttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgcgggaacgttgaagatgt 47876927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 235439 - 235635
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |||    
T  235439 gacatcacaggagcagccccagttacatcaaaatatggagttaatttggcataaacaggttcatctcaaagtctctatccttgcttggcgacttctgagg 235538  T
Q  116 gatcagttacctac--aaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||  ||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||    
T  235539 gatcggttacctacaaaaaaaatcatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggttgcgagaacgttgaagatgt 235635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 11277254 - 11277448
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||| ||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| | ||     
T  11277254 gacatcacaggagcaaccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 11277353  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  11277354 gatcggttacctacgaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 11277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 37919682 - 37919488
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||| ||||||||  ||||| ||||||||| | |||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  37919682 gacatcacaggagcagccccaattacatcatcatatgaagttaatttggtataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 37919583  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||  ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||    
T  37919582 gattggttacctacaaaaaataatttggcaaaccgttgcattttacctttggaggcgcggttgtgtgtttctagttgtgggaacgttgaagatgt 37919488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 17720773 - 17720579
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||| || |||||||||||  |||||||||||| ||||| |||||||||| ||||||| ||||||||||| ||||||||||| |||    
T  17720773 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatggcgacttctgagg 17720674  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||||| | |||| |||||||  ||||||||    
T  17720673 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctagttgtgggaatgaagaagatgt 17720579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 29968113 - 29967919
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||| ||||||||||| || | |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||  ||||| | ||     
T  29968113 gacatcacaggagcaaccccagttacaccatagtatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttgaggacttttgaga 29968014  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||| |||| |||||||||||| | ||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  29968013 gatcggttacctacgaaaagtaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 29967919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 4938130 - 4938324
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  4938130 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 4938229  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  4938230 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgt 4938324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 18532741 - 18532653
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 129  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| | ||||||||||||||||||  | |||||||  ||||||||    
T  18532741 catcaaaatatggagttaatctcgcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagggatcgtttacctac 18532653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 25619572 - 25619508
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||    
T  25619572 catcaaaatatggagttaatatggcataaacaggttcctttaaaagtttctatccttgcttggcg 25619508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 37254871 - 37254807
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    |||||||||||||||||||| | ||||||||||||| || | ||||| || ||||||||||||||    
T  37254871 catcaaaatatggagttaatctggcataaacaggttactttaaaagtttcaatccttgcttggcg 37254807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 28535677 - 28535872
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| ||||| |||||||||| ||||||| ||||||||||||||||||||||| |||    
T  28535677 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcatacacaggttcctctcaaagtttctatccttgcttggcgacttctgagg 28535776  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||| | ||||||||| |||||| |||||||| |||||||||    
T  28535777 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcagatgtgtgtttctggttgtgggaatgtagaagatgtc 28535872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 35983793 - 35983988
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||| || || |||||||||| ||||||| ||||||||||||||||||||||| |||    
T  35983793 gacatcacaggagcagcctcagttacatcaaaacatggagttaatttggcttacacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 35983892  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
     ||| ||||||||||||||||||||||||||| | ||  |||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||    
T  35983893 aatcggttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttttggttgtgggaatgtagaagttgtc 35983988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 42928269 - 42928074
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||| ||||| |||||||||||||||| ||||||||||||||||| | |||||||||||||| |||||||||||||||||| |||||| ||||| |||    
T  42928269 gacatcgcaggaacagccccagttacatccaaatatggagttaatttggtataaacaggttcctctcaaagtctctatccttgtttggcggcttctgagg 42928170  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||| |||| ||||||||||||||||| ||||  |||| |||||||| ||||||| |||||||||||| | ||| |||||||| ||||||||||||    
T  42928169 gatcggttaactacaaaaaataatttgacaaactgtggcattttacccttggaggtgcggttgtgtgtctctggatgcgggaacgttgaagatgtc 42928074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 23238521 - 23238328
Alignment:
Q  17 acatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttaggg 116  Q
    |||||||||||||| ||||||||||| || |||||||||||||||| ||||||| |||||||| ||||||| ||||||||||||||| ||||| | || |    
T  23238521 acatcacaggagcaaccccagttacaccataatatggagttaatttggcataaataggttcctctcaaagtttctatccttgcttggagacttttgagag 23238422  T
Q  117 atcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||| ||||||||| |||| |||||||||||| ||||| |||||| |||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  23238421 atcggttacctacgaaaagtaatttggcaaaccgtggcattttagctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 23238328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 30732316 - 30732510
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  30732316 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatctttgcttggcgacttctgagg 30732415  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| ||||||| ||| || |||| ||| ||||||||    
T  30732416 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 30732510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 12825337 - 12825143
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||| |||||| ||||||| | ||||||||||||||||||||| |||    
T  12825337 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaagttcctctcaaagtatgtatccttgcttggcgacttctgagg 12825238  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| ||||||| ||| || |||| ||| ||||||||    
T  12825237 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 12825143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 210
Target Start/End: Complemental strand, 8228148 - 8227970
Alignment:
Q  32 ccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaa 131  Q
    ||||||||||| || ||||||||||||||||  ||||||||||||||| ||||||| ||||||||||||||| ||||| | || |||| ||||||||| |    
T  8228148 ccccagttacaccataatatggagttaatttgacataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatcggttacctacga 8228049  T
Q  132 aaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||| |||||||||||| ||||  ||||||||||||||||||||||||||||||| ||| || | ||| |||||||||||    
T  8228048 aaagtaatttggcaaaccgtgacattttacctttggaggcgcggttgtgtgtttctggatgtgagaacgttgaagatgt 8227970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 27117163 - 27117357
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||  ||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  27117163 gacatcacaggagcagatccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 27117262  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    || | |||||| ||||||  |||||||| ||| ||||| ||| || || |||||| |||||| ||||||| ||| || |||||||| ||||||||    
T  27117263 gaccggttacccacaaaacttaatttggtaaaccgtggcattctatctatggaggagcggttatgtgtttctggctgtgggaatgtcgaagatgt 27117357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 42513858 - 42513664
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  42513858 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 42513759  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||  ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  42513758 gatcggttacctacaaaacttaatttggcaaatcgtgacattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgt 42513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 211
Target Start/End: Original strand, 19255154 - 19255320
Alignment:
Q  46 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 145  Q
    ||||||||||||||||| |||||||||| || || ||||||| |||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||    
T  19255154 aaatatggagttaatttggcataaacagatttctctcaaagtatctatccttgcttggcggtttctgagggatcggttacctacaaaaaataatttggca 19255253  T
Q  146 aatcgtggtattttacctttggag-gcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    ||| |||| ||| | || |||||| ||||||||||||||   ||| |||||| | ||||||||||||    
T  19255254 aattgtggcattattcccttggagcgcgcggttgtgtgtcactggatgcgggcacgttgaagatgtc 19255320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 154
Target Start/End: Complemental strand, 31641649 - 31641512
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||| ||||| |||||||||| | ||||| ||||||||||| ||| |||| || |||    
T  31641649 gacatcacaggagcagcctcacttacatcaaaacatggagttaatttggcatacacaggttcctct-aaagtttctatccttgcatggagactactgagg 31641551  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggt 154  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  31641550 gatcggttacctacaaaaaataatttggcaaaccgtggt 31641512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 25857451 - 25857553
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 140  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  |||||    
T  25857451 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatt 25857550  T
Q  141 tgg 143  Q
    |||    
T  25857551 tgg 25857553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 133
Target Start/End: Complemental strand, 27767180 - 27767063
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| | ||||||||||||||||||  | |||    
T  27767180 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttatatccttgcttggcgactgttgagg 27767081  T
Q  116 gatcagttacctacaaaa 133  Q
    ||||  ||||||||||||    
T  27767080 gatcgtttacctacaaaa 27767063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 8300184 - 8300311
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||||||||  | |||    
T  8300184 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagg 8300283  T
Q  116 gatcagttacctacaaaaaataatttgg 143  Q
    ||||  |||||||| |||  ||||||||    
T  8300284 gatcgcttacctactaaatctaatttgg 8300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 33385376 - 33385489
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||||||  | |||    
T  33385376 gacatcacaggaacaacctcatattcatcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgttgagg 33385475  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  33385476 gatcgtttacctac 33385489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 100 - 211
Target Start/End: Original strand, 12820035 - 12820146
Alignment:
Q  100 ttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaat 199  Q
    |||||||||| | ||||||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| ||||||| ||| || |||| |    
T  12820035 ttggcgacttatgagggatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggatt 12820134  T
Q  200 gttgaagatgtc 211  Q
    || |||||||||    
T  12820135 gtcgaagatgtc 12820146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 10776903 - 10776789
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaa-atatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttag 114  Q
    |||||||||||| || || ||  | ||||||| ||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||| || ||    
T  10776903 gacatcacaggaacaacctcatgttcatcaaatatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgag 10776804  T
Q  115 ggatcagttacctac 129  Q
    |||||  ||||||||    
T  10776803 ggatcgtttacctac 10776789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 26073030 - 26072899
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||| ||||| |||||||| || ||||||||| |||||||||||| ||||||| | |||||| | |||||| ||||| ||| |||||||||  | |||    
T  26073030 gacatcgcaggaacagccccatttgcatcaaaatttggagttaatttggcataaatatgttcctttgaaagtccctatctttgtttggcgactgttgagg 26072931  T
Q  116 gatcagttacctacaaaaaataatttggcaaa 147  Q
    ||||  |||||||| ||| | || ||||||||    
T  26072930 gatcgattacctactaaagagaaattggcaaa 26072899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 37 - 176
Target Start/End: Complemental strand, 33169775 - 33169636
Alignment:
Q  37 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 136  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  33169775 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 33169676  T
Q  137 aatttggcaaatcgtggtattttacctttggaggcgcggt 176  Q
    |||||||||| ||||||  | ||| ||||||||| |||||    
T  33169675 aatttggcaagtcgtggggtcttatctttggaggagcggt 33169636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 105
Target Start/End: Original strand, 18359094 - 18359183
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | |||||||||||||||| | ||||| || ||||||||||||||    
T  18359094 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatctagcataaacaggttcctttaaaagtttcaatccttgcttggcg 18359183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 27165956 - 27166121
Alignment:
Q  18 catcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttaggga 117  Q
    |||||||||| || ||| | ||||||||||||||||| ||||||| |||  ||||||| ||| | |||||||||||| | | |||||||   || | |||    
T  27165956 catcacaggaacaacccaatttacatcaaaatatggaattaatttggcaccaacaggtacctctaaaagtctctatcttcgtttggcgaacgctgaagga 27166055  T
Q  118 tcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgt 183  Q
    ||  ||||||| ||||   |||||||||| |||||| ||| | |||||||| |||| |||||||||    
T  27166056 tcgtttacctataaaagcaaatttggcaagtcgtggaattcttcctttggaagcgcagttgtgtgt 27166121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 153
Target Start/End: Original strand, 18089791 - 18089900
Alignment:
Q  44 caaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttgg 143  Q
    |||||| |||||||||||| ||| |||||||| ||  | |||||||||||| ||||||| |||||  | || ||||  |||||||| |   | |||||||    
T  18089791 caaaatttggagttaatttggcacaaacaggtaccgttgaaagtctctatctttgcttgacgactattgagagatcgtttacctactaggcaaaatttgg 18089890  T
Q  144 caaatcgtgg 153  Q
    ||||||||||    
T  18089891 caaatcgtgg 18089900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 7404051 - 7403856
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| | ||||||||||||||||||||||||||||||| |||    
T  7404051 gacatcacaggagcagccccagttacatcaaaatatgaagttaatttggcataaacaagttcatttcaaagtctctatccttgcttggcgacttctgagg 7403952  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||| ||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||| | ||| |||||||| ||||||||||||    
T  7403951 gatcggttacctacaaaaaagaatttggcaaaccgtggcattttacgtttggaggcgcggttgtgtgtctctggatgcgggaacgttgaagatgtc 7403856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 1828542 - 1828736
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||  |  |     
T  1828542 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagactattgcga 1828641  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||  |||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || |||||||||||||||||    
T  1828642 gataggttacctacaaaaactaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttgaagatgt 1828736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 15740359 - 15740165
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||| ||||||||||||||||||| || |||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| |  |     
T  15740359 gacatcataggagcagccccagttacaccataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgcga 15740260  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||||||||||| |||  ||||| ||||||||||||||||||||||||||||||| ||| || ||||||||| |||||||    
T  15740259 gatcggttacctacaaaaaataatttgacaagccgtggcattttacctttggaggcgcggttgtgtgtttctgggtgtgggaatgttaaagatgt 15740165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 19755405 - 19755208
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  19755405 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19755306  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtatt---ttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||||||||||||||||| ||||  |||   |||||||||||||||||||||||||||| ||| || ||||  |||||||||||    
T  19755305 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgt 19755208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 19784401 - 19784598
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||| ||||||||||| || |||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||| || ||     
T  19784401 gacatcacaagagcagccccaatttcatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgactcctgaga 19784500  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtatt---ttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||||||||||||||||| ||||  |||   |||||||||||||||||||||||||||| ||| || ||||  |||||||||||    
T  19784501 gatcggttacctacaaaaaataatttggcaaaccgtgacattttattacctttggaggcgcggttgtgtgtttctggatgtgggagcgttgaagatgt 19784598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 47685897 - 47686091
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||| ||||||||| ||||||| || ||| |||| |||||||  ||||||||||||||| ||||||| ||||||||||||||||||||| | ||     
T  47685897 gacatcacaagagcagcccaagttacaccataatctggacttaatttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgaga 47685996  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||| ||||||||||||| ||||| |||||| || |||||| |||||| ||||||| ||| || |||||||| ||||||||    
T  47685997 gatcggttacctacaaaacataatttggcaaaccgtggcattttatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatgt 47686091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 13270893 - 13271087
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  13270893 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 13270992  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  13270993 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgagttactggatgtgggattgtcgaagatgt 13271087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 23642593 - 23642787
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  23642593 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 23642692  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  23642693 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgt 23642787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 47418942 - 47418805
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  47418942 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 47418843  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtgg 153  Q
    |||| |||||||||||||  ||||||||||| ||||||    
T  47418842 gatcggttacctacaaaacttaatttggcaactcgtgg 47418805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 11587200 - 11587331
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| ||||| ||||| |||| |  |||||||||||||| ||||||| || | ||||||||||| ||||| ||||||||||| ||||| |||    
T  11587200 gacatcacaggaacagcctcagttgcatccatctatggagttaatttggcataaatagatacctatcaaagtatctattcttgcttggcggcttctgagg 11587299  T
Q  116 gatcagttacctacaaaaaataatttggcaaa 147  Q
     |||  |||||||| ||| | |||||||||||    
T  11587300 aatcgtttacctacgaaagaaaatttggcaaa 11587331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 129
Target Start/End: Original strand, 45472736 - 45472824
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 129  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| |||||||||| |||||||||  | |||||||  ||||||||    
T  45472736 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgtttggcgactgttgagggatcgtttacctac 45472824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 55725714 - 55725822
Alignment:
Q  42 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 141  Q
    ||||||||||||||||||||| ||||||||| |||||| | ||||| || |||||||||||||| ||  | |||||||  |||||||||||| | |||||    
T  55725714 atcaaaatatggagttaatttggcataaacaagttcctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaattt 55725813  T
Q  142 ggcaaatcg 150  Q
    |||| ||||    
T  55725814 ggcagatcg 55725822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 12697951 - 12697838
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||| | ||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  12697951 gacatcacaggaacaacctcatgttcatcaaaatatgaaattaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 12697852  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  12697851 gatcgtttacctac 12697838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 8361213 - 8361146
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgact 108  Q
    |||||||||||||||||||||| |||||||||||||||  | ||||| |||||||||| |||||||||    
T  8361213 catcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgtttggcgact 8361146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 42 - 105
Target Start/End: Complemental strand, 20002837 - 20002774
Alignment:
Q  42 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    ||||||||||||||||||||| |||||||||||||| | | ||||| |||||| ||||||||||    
T  20002837 atcaaaatatggagttaatttggcataaacaggttcttttaaaagtttctatcattgcttggcg 20002774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 172
Target Start/End: Complemental strand, 46145792 - 46145657
Alignment:
Q  37 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 136  Q
    ||||||||||||||||||||| |||| ||| ||| |||| ||| | ||||| |||||  ||||||||||  | || ||||| |  |||||||| ||| |     
T  46145792 gttacatcaaaatatggagttgatttggcacaaataggtgcctttgaaagtgtctatttttgcttggcgcttgctgagggaccgattacctactaaacaa 46145693  T
Q  137 aatttggcaaatcgtggtattttacctttggaggcg 172  Q
    |||||||||| ||||||  | ||| |||||||||||    
T  46145692 aatttggcaagtcgtggggtcttatctttggaggcg 46145657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 34332817 - 34333011
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||| |||||| ||     
T  34332817 gacatcacaggagcagccccagttacatcataatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcaacttctgaga 34332916  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  34332917 gatcgattacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 34333011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 40930530 - 40930725
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||| || ||||| |||||||| ||||||||| |||  ||||||||||||||| ||||||| ||||||||||||||||||||| | |||    
T  40930530 gacatcacaggagcaacctcagttgcatcaaaacatggagttagtttgacataaacaggttcctctcaaagtatctatccttgcttggcgacttttgagg 40930629  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||  ||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||| |||||| ||||| || |||||||||    
T  40930630 gattggttacctacaaaaaataatttggcaaaccgtggccttttacctttggaggcgcggttgtgtgtttctggttgtgggaacgtcgaagatgtc 40930725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 19920231 - 19920424
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||| ||||||||||||| ||  ||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  19920231 gacatcacaggagaagccccagttacaccatcatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 19920330  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatg 209  Q
    |||| |||||||||||||  |||||||| |||||| || ||| || || |||||| |||||| ||||||| ||| || |||||||| |||||||    
T  19920331 gatcggttacctacaaaacttaatttggtaaatcgaggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaagatg 19920424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 2364415 - 2364221
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  2364415 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 2364316  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  2364315 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgt 2364221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 7312914 - 7312720
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| ||||||||||||||||||||  | |||    
T  7312914 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtacctctcaaagtatctatccttgcttggcgactaatgagg 7312815  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| |  || |||||| |||| | ||||||| ||| || |||| ||| ||||||||    
T  7312814 gatcggttacctacaaaacttaatttggcaaatcgtggcattctgtctgtggaggagcggctttgtgtttctggatgtgggattgtcgaagatgt 7312720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 16 - 153
Target Start/End: Original strand, 10323573 - 10323710
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || | |||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  10323573 gacatcacaggagcagccccagttacaccatagtatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 10323672  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtgg 153  Q
    |||| |||||||||||||  ||||||||||| ||||||    
T  10323673 gatcggttacctacaaaacttaatttggcaactcgtgg 10323710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 196
Target Start/End: Complemental strand, 7032421 - 7032276
Alignment:
Q  51 tggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcg 150  Q
    |||||||  ||| ||| |||||||||||| ||||| | ||||||||||| ||||||||||| ||||||| ||||||||||||||| ||| |||| ||| |    
T  7032421 tggagttggtttggcacaaacaggttcctctcaaaatttctatccttgcatggcgacttctgagggatcggttacctacaaaaaacaatctggcgaattg 7032322  T
Q  151 tggtattttacctttggaggcgcggttgtgtgtttttggttgcggg 196  Q
    |||| ||||||||||||| ||||||| |||||| |  |||||||||    
T  7032321 tggtcttttacctttggatgcgcggtcgtgtgtctcaggttgcggg 7032276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 26771011 - 26771158
Alignment:
Q  36 agttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaa 135  Q
    ||||||||| ||||||||||||||| | ||||||||||| |||| | ||||||||||| ||| ||||||| ||| | |||||||  |||||||| |||      
T  26771011 agttacatccaaatatggagttaatgtggcataaacaggctcctcttaaagtctctattcttacttggcggcttttgagggatcgtttacctacgaaagc 26771110  T
Q  136 taatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgt 183  Q
     ||||||||||| ||||||||  | |||||||||| || |||||||||    
T  26771111 aaatttggcaaaccgtggtatcattcctttggaggtgcagttgtgtgt 26771158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 29523747 - 29523860
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  29523747 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 29523846  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  29523847 gatcgtttacctac 29523860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 11203957 - 11203844
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||| ||||||||||||||  | |||    
T  11203957 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatacttgcttggcgactgttgagg 11203858  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  11203857 gatcgtttacctac 11203844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 15312721 - 15312557
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||| ||||| ||  |||| |||||||||||| |||||||||||| |||||||||||| ||| | ||||||| |||  |||||||| |||| || |||    
T  15312721 gacatcgcaggaacatacccatttacatcaaaatttggagttaatttggcataaacaggtacctctaaaagtctatatatttgcttggtgactgctgagg 15312622  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtg 180  Q
     |||  || ||||  ||| | ||||||| ||||||||| ||| ||||  ||||||||||||||||    
T  15312621 aatcgtttgcctattaaagagaatttggaaaatcgtgggattataccaatggaggcgcggttgtg 15312557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 2755980 - 2755822
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||| ||||| || |||  ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || |||    
T  2755980 gacatcgcaggaacaacccatgttacatcaaaatatggagttgatttggcacaaacaggtacctttgaaagtgtctatatttgcttggcgtttgctgagg 2755881  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcg 174  Q
    || | ||||||||| ||| | |||||||||| ||||||  | ||| |||||||||||||    
T  2755880 gaccggttacctactaaataaaatttggcaagtcgtggggtcttatctttggaggcgcg 2755822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 12342228 - 12342340
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| ||||||||||||| || | ||||| ||||||||||||||||||||  | |||    
T  12342228 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggtt-ctttaaaagtttctatccttgcttggcgactgttgagg 12342326  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  12342327 gatcgtttacctac 12342340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 17097894 - 17098043
Alignment:
Q  32 ccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaa 131  Q
    ||||| |||||||||||| |||||||||||| |||||||||||    | | |||||||||||| |||||| ||||||  | | ||||| ||||||||| |    
T  17097894 ccccatttacatcaaaatgtggagttaatttggcataaacaggcatatgtgaaagtctctatctttgcttagcgactgttgatggatcggttacctacta 17097993  T
Q  132 aaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgt 181  Q
    || | ||||||||||| ||||| ||| |  || ||||||| |||||||||    
T  17097994 aagaaaatttggcaaaccgtgggattatttctatggaggcacggttgtgt 17098043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 33496685 - 33496572
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||| ||||||||||||||| |||||||||||||||| | ||||| |||||| |||||||||||||  | |||    
T  33496685 gacatcacaggaacaacctcatgttcatcaatatatggagttaatttggcataaacaggttcctttaaaagtttctatcattgcttggcgactgttgagg 33496586  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  33496585 gatcgtttacctac 33496572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 35214398 - 35214462
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||| ||||||    
T  35214398 catcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgtttggcg 35214462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 37 - 176
Target Start/End: Original strand, 963186 - 963325
Alignment:
Q  37 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 136  Q
    ||||||||||||||||||||| |||| ||| |||||||| ||| | ||||| |||||  ||||||||||  | || ||||| | ||||||||| ||| |     
T  963186 gttacatcaaaatatggagttgatttggcacaaacaggtgcctttgaaagtgtctatttttgcttggcgtttgctgagggaccggttacctactaaacaa 963285  T
Q  137 aatttggcaaatcgtggtattttacctttggaggcgcggt 176  Q
    |||||||||| | ||||  | ||| ||||||||| |||||    
T  963286 aatttggcaagttgtggggtcttatctttggaggagcggt 963325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 129
Target Start/End: Original strand, 36801106 - 36801190
Alignment:
Q  45 aaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 129  Q
    |||||||||||||||||| ||||||| |||||||  | ||||| | |||||||||||||| ||| || |||||||  ||||||||    
T  36801106 aaaatatggagttaatttagcataaataggttcccttaaaagtttatatccttgcttggcaactgctgagggatcgtttacctac 36801190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 7031055 - 7031146
Alignment:
Q  52 ggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttgg 143  Q
    ||||||||||| |||||||||||||||| | ||| | ||||||||||||||||| ||  | |||||||  |||||||| |||  ||||||||    
T  7031055 ggagttaatttggcataaacaggttcctttaaaactttctatccttgcttggcgtctgttgagggatcgcttacctactaaatctaatttgg 7031146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 99
Target Start/End: Complemental strand, 19890791 - 19890733
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgc 99  Q
    |||||||||||||||||||| | |||||||||||||||| | ||||| || ||||||||    
T  19890791 catcaaaatatggagttaatctggcataaacaggttcctttaaaagtttccatccttgc 19890733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 170
Target Start/End: Complemental strand, 3140969 - 3140836
Alignment:
Q  37 gttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaat 136  Q
    ||||||||||||||||||||| |||| | | |||||||| ||| | ||||| |||||  |||||||||   | || ||||| | ||||||||| ||| |     
T  3140969 gttacatcaaaatatggagttgatttggtacaaacaggtgcctttgaaagtgtctatatttgcttggcatttactgagggaccggttacctactaaacaa 3140870  T
Q  137 aatttggcaaatcgtggtattttacctttggagg 170  Q
    |||||||||| ||||||  | ||| |||||||||    
T  3140869 aatttggcaagtcgtggggtcttatctttggagg 3140836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 16179073 - 16178952
Alignment:
Q  29 cagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttaccta 128  Q
    |||||||| |||| ||||||| | |||||||||| |||||||||||| ||| | ||||| |||||  |||| ||||| ||  | | |||||   ||||||    
T  16179073 cagccccatttacgtcaaaatttagagttaatttggcataaacaggtacctcttaaagtatctatttttgcgtggcgcctgatgaaggatcgtctaccta 16178974  T
Q  129 caaaaaataatttggcaaatcg 150  Q
    | ||| | ||||||||||||||    
T  16178973 ctaaagagaatttggcaaatcg 16178952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 13396526 - 13396332
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||| ||||||||| |||||| ||||||| |||||||||||||||||||| || ||     
T  13396526 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaagttcctctcaaagtatctatccttgcttggcgactcctgaga 13396427  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  13396426 gatcggttacctacaaaaaataatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 13396332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 41665371 - 41665565
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||| ||||||||  ||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| | || ||     
T  41665371 gacatcacaggagcagccccaattacatcatcatatggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgattcctaaga 41665470  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||||||||||||||||||||||||||||||| | ||  ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  41665471 gatcagttacctacaaaaaataatttggcaaaccatgacattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 41665565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 9922739 - 9922544
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||||| || |||||||||||  |||||||||||| ||||| |||||||||| ||||||| ||||||||||| || |||||||| |||    
T  9922739 gacatcacaggagcagcctcacttacatcaaaacttggagttaatttggcatacacaggttcctctcaaagtttctatccttgcatgacgacttctgagg 9922640  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||| ||||||||||||| ||||||||||||| ||||| ||||||||| ||||||||||| ||||||||| |||||| |||||||| |||||||||    
T  9922639 gatcggttacctacaaaagataatttggcaaaccgtggcattttacctctggaggcgcggatgtgtgtttctggttgtgggaatgtagaagatgtc 9922544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 32266698 - 32266508
Alignment:
Q  20 tcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatc 119  Q
    ||||| ||||| || |||||||| || ||| |||||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||| | || ||||    
T  32266698 tcacaagagcaaccacagttacaccataatttggagttaatttggcataaacaggttcctctcaaagtatctatccttgcttggagacttttgagagatc 32266599  T
Q  120 agttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
     ||||||||| |||| |||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  32266598 ggttacctacgaaaagtaatttggcaaaccgtggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 32266508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 7924524 - 7924330
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  7924524 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 7924425  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  7924424 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgt 7924330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 8299941 - 8299747
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||| ||||||| ||||| || ||| |||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  8299941 gacatcacaggagtagccccaattacaccataatttggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 8299842  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| ||| || ||||||  ||| || |||| ||| ||||||||    
T  8299841 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcgattatgtgttgctggatgtgggattgtcgaagatgt 8299747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 172241 - 172047
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||  ||||||||| || || ||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  172241 gacatcacaggagcagaaccagttacaccataaaatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 172142  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    || | |||||| ||||||  |||||||| ||| ||||  ||| || || |||||| |||||| ||||||| ||| || || ||||| ||||||||    
T  172141 gaccggttacccacaaaacttaatttggtaaaccgtgacattctatctatggaggagcggttatgtgtttctggctgtggtaatgtcgaagatgt 172047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 20824434 - 20824307
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||    
T  20824434 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagg 20824335  T
Q  116 gatcagttacctacaaaaaataatttgg 143  Q
    ||||  |||||||| |||  ||||||||    
T  20824334 gatcgcttacctactaaatctaatttgg 20824307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 13200261 - 13200067
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||| ||| |||||||||||||||| | ||||| || |||||||||||||  ||  | |||    
T  13200261 gacatcacaggaacaacctcatgttcatcaaaatatggagttagtttggcataaacaggttcctctaaaagtttcaatccttgcttggcagctattgagg 13200162  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||||  |||||||||||| | ||||||||| | ||  | ||| ||||| ||||||| ||||| ||||||  ||| || ||| |||||||||||||    
T  13200161 gatcgtttacctacaaaatacaatttggcagagcgcagaattctacctatggaggctcggttttgtgttactgggtgtgggcatgttgaagatgt 13200067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 17699595 - 17699507
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 129  Q
    |||||||||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||||||| || |||||||  ||||||||    
T  17699595 catcaaaatatggagttaatttggcataaacaggttcccttaaaagtttctatccttgcttggcgactgctgagggatcgtttacctac 17699507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 37434270 - 37434157
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || ||  | |||||||||||||||||||||| ||||||||| |||||| | ||||||||||| ||||||||||||||  | |||    
T  37434270 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatttggcataaacatgttcctttaaaagtctctattcttgcttggcgactgttgagg 37434171  T
Q  116 gatcagttacctac 129  Q
    ||||  ||||||||    
T  37434170 gatcgtttacctac 37434157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 2170480 - 2170389
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgac 107  Q
    |||||||||||| || || ||  | |||||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||||||||    
T  2170480 gacatcacaggaacaacctcatgttcatcaaaatatggagttaatctggcataaacaggttcctttaaaagtttctatccttgcttggcgac 2170389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 182
Target Start/End: Original strand, 34137013 - 34137131
Alignment:
Q  64 gcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggtattttacct 163  Q
    |||||||||||| ||| ||||||||||||| ||||||||||| ||| | | |||||  |||||||| ||| | ||||||||||| || |||||  | |||    
T  34137013 gcataaacaggtacctctcaaagtctctattcttgcttggcggcttatgatggatcgtttacctacgaaagaaaatttggcaaaccgcggtatcattcct 34137112  T
Q  164 ttggaggcgcggttgtgtg 182  Q
     |||||| |||||||||||    
T  34137113 gtggaggggcggttgtgtg 34137131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 46 - 181
Target Start/End: Complemental strand, 5181778 - 5181643
Alignment:
Q  46 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 145  Q
    |||||||||| |||||| |||||||||||| ||| | ||||||| ||| |||| |||||| |  || |||||||| ||||| |||||| ||||||||  |    
T  5181778 aaatatggagataatttggcataaacaggtgcctctaaaagtctatattcttgtttggcggcggctgagggatcatttaccaacaaaagataatttgata 5181679  T
Q  146 aatcgtggtattttacctttggaggcgcggttgtgt 181  Q
    || ||| |  |  | |||||||||||||||||||||    
T  5181678 aaccgtcgagtcattcctttggaggcgcggttgtgt 5181643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 43270563 - 43270496
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgact 108  Q
    ||||||||||||||||| || | |||||||||||||||| | ||||| ||||||||| ||||||||||    
T  43270563 catcaaaatatggagttcatctggcataaacaggttcctttaaaagtttctatccttacttggcgact 43270496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 2529963 - 2529830
Alignment:
Q  77 cctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggt 176  Q
    |||| |||||| || |||||||||||||| ||  | |||||||  |||||||||||| | ||||||| | ||||||| ||| ||| ||||||||| ||||    
T  2529963 cctaccaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaatttggtagatcgtggaattctacttttggaggctcggt 2529864  T
Q  177 tgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    | ||||||   || || ||| |||||||||||||    
T  2529863 tttgtgttacagggtgtgggcatgttgaagatgt 2529830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 211
Target Start/End: Complemental strand, 41207154 - 41206959
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||| ||||| || || |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||| |||    
T  41207154 gacatcgcaggaacatcctcagttacatccaaatatggagttaatttggcataaacaggttcctctcaaagtctctatccttgcttggcggcttctgagg 41207055  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgtc 211  Q
    |||| ||||||||||||||||||||||||||||||||| ||| | || ||||||||||||||||||||   ||| |||||| | ||||||||||||    
T  41207054 gatcggttacctacaaaaaataatttggcaaatcgtggcattattcccttggaggcgcggttgtgtgtcactggatgcgggcacgttgaagatgtc 41206959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 4552307 - 4552113
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| ||||||| |||||||| | ||||| ||||||||||||||||||||||| |||    
T  4552307 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaataggttcctcttaaagtatctatccttgcttggcgacttctgagg 4552208  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| ||||||| ||| || |||| ||| ||| ||||    
T  4552207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaaaatgt 4552113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 41 - 210
Target Start/End: Complemental strand, 15917767 - 15917598
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 140  Q
    ||||||||||| |||||||||| ||||||| |||||||| | ||||||| ||||||||||||| |||| || |||||||  ||||||||||||  |||||    
T  15917767 catcaaaatattgagttaatttcgcataaataggttcctctgaaagtctgtatccttgcttggggactgctgagggatcgtttacctacaaaagttaatt 15917668  T
Q  141 tggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||||||||||||||||| | |||||||| | ||||||||||||   |||||| ||| |||||||||||||    
T  15917667 tggcaaatcgtggtattattcctttggaagtgcggttgtgtgtcactggttgtgggcatgttgaagatgt 15917598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 46 - 183
Target Start/End: Original strand, 17764994 - 17765131
Alignment:
Q  46 aaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatttggca 145  Q
    ||||||||||||||| | ||||||||||| |||| | ||||||||||| ||||||||||| ||  | |||||||| |||||||| |||   |||||||||    
T  17764994 aaatatggagttaatatggcataaacaggctcctcttaaagtctctattcttgcttggcggctattgagggatcatttacctacgaaagcaaatttggca 17765093  T
Q  146 aatcgtggtattttacctttggaggcgcggttgtgtgt 183  Q
    || ||||||||  | |||||||||||||||||||||||    
T  17765094 aaccgtggtatcattcctttggaggcgcggttgtgtgt 17765131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 42 - 210
Target Start/End: Complemental strand, 12645648 - 12645480
Alignment:
Q  42 atcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataattt 141  Q
    ||||||||||||||||||||| ||||||||||||| || | ||||| || |||||||||||||| ||  | |||||||  |||||||||||| | |||||    
T  12645648 atcaaaatatggagttaatttggcataaacaggtttctctaaaagtttcaatccttgcttggcggctattgagggatcgcttacctacaaaatacaattt 12645549  T
Q  142 ggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    | || ||||  | ||| ||||||||||||| ||||| ||||||   || || ||| |||||||||||||    
T  12645548 gacagatcgcagaattctacctttggaggctcggttttgtgttacagggtgtgggcatgttgaagatgt 12645480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 28252858 - 28252664
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| ||||| |||||||||  |  |||||| ||||||| |||||||||||| ||| | ||||| ||||| ||||||||||| ||| | |||    
T  28252858 gacatcacaggaacagcctcagttacattcatctatggaattaatttggcataaacaggtacctctaaaagtatctattcttgcttggcggcttttgagg 28252759  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    ||||  |||||||| ||    ||||||||||| | ||| ||| | | | |||||| |||||| |||||||  ||||| ||  ||| |||||||||    
T  28252758 gatcgcttacctacgaagggaaatttggcaaaccatggcattattcatatggaggggcggttatgtgtttccggttgtggtcatgatgaagatgt 28252664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 103
Target Start/End: Original strand, 10999978 - 11000040
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttgg 103  Q
    |||||||||||||||||||| |  |||||||||||| || | ||||| |||||||||||||||    
T  10999978 catcaaaatatggagttaatctgccataaacaggtttctttaaaagtttctatccttgcttgg 11000040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 14439865 - 14439777
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctac 129  Q
    ||||||| |||||||||||| | |||||||||||||||| | ||||| |||||| | ||||| |||||  | |||||||  ||||||||    
T  14439865 catcaaactatggagttaatctggcataaacaggttcctttaaaagtttctatcttggcttgacgactgttgagggatcgtttacctac 14439777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 38604376 - 38604464
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggc 104  Q
    |||||||||||| || ||  | || |||||||||||||||||||| | ||||||||| || ||| | ||||| || |||||||| ||||    
T  38604376 gacatcacaggaacaacctaattttcatcaaaatatggagttaatctggcataaacaagtacctctaaaagtttcaatccttgcatggc 38604464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 4e-56; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 51052618 - 51052424
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  51052618 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctgagg 51052519  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| ||||||| ||| || |||| ||| ||||||||    
T  51052518 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggattgtcgaagatgt 51052424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 11909107 - 11909301
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||||||||||| |||    
T  11909107 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggttcctctcaaagtatctatcattgcttggcgacttctgagg 11909206  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||| | ||||||| ||| || |||| ||| ||||||||    
T  11909207 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggctatgtgtttctggatgtgggattgtcgaagatgt 11909301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 35541187 - 35541033
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||||| ||| ||||||| |||||||||||||||||||| || |||    
T  35541187 gacatcacaggagcagccccagttacaccataatatggacttaatttggcataaacaggtccctctcaaagtatctatccttgcttggcgactactgagg 35541088  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggagg 170  Q
    |||| |||||| |||||| ||||||||||||||||||| ||| || || ||||||    
T  35541087 gatcggttacccacaaaacataatttggcaaatcgtggcattctatctgtggagg 35541033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 6050741 - 6050547
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  6050741 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 6050642  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  ||||||||||||| |||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  6050641 gatcggttacctacaaaacttaatttggcaaattgtggcattctatctgtggaggagcggttctgcgttgctggatgtgggattgtcgaagatgt 6050547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 143
Target Start/End: Original strand, 16917836 - 16917938
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagggatcagttacctacaaaaaataatt 140  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||  | |||||||  |||||||| |||  |||||    
T  16917836 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcgactgttgagggatcgcttacctactaaatctaatt 16917935  T
Q  141 tgg 143  Q
    |||    
T  16917936 tgg 16917938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 41 - 106
Target Start/End: Complemental strand, 43388480 - 43388415
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcga 106  Q
    |||||||||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||    
T  43388480 catcaaaatatggagttaatttggcataaacaggttcctttaaaagtttctatccttgcttggcga 43388415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 47623079 - 47623271
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||| || || |||||||||  | ||||||| ||||||| |||||||||||| ||| ||||||| ||||| ||||||||||| ||| | |||    
T  47623079 gacatcacaggaacaacctcagttacattcatatatggaattaatttggcataaacaggtacctctcaaagtatctattcttgcttggcggcttttgagg 47623178  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    || |  |||||||| ||    ||||||||||| ||||  ||| | ||| |||||| |||||  ||||||| |||||| ||| ||| |||||||||    
T  47623179 gaccgcttacctacgaagggaaatttggcaaaccgtgacattattcctatggaggggcggt--tgtgtttctggttgtgggcatgatgaagatgt 47623271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 28351852 - 28351776
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctcta 92  Q
    |||||||| |||| | ||||| | ||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||    
T  28351852 gacatcactggagtatccccattcacatcaaaatatggagttaatttggcataaaccggtccctctgaaagtctcta 28351776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 37191237 - 37191301
Alignment:
Q  41 catcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcg 105  Q
    |||||||||||||||||||| | |||||||| ||||| | | ||||| | |||||||||||||||    
T  37191237 catcaaaatatggagttaatctggcataaactggttcatttaaaagtttatatccttgcttggcg 37191301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 3390 - 3196
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||||| |||||||||||||||| | ||||| ||||||||||||||| ||||| | ||     
T  3390 gacatcacaggagcaaccctagttacaccataatatggagttaatttggcataaacaggttcctcttaaagtttctatccttgcttggagacttttgaga 3291  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| ||||||||| ||||  ||||||||||| | ||| ||||||||||||||||||||||||||||||| ||| || ||||| |||||||||||    
T  3290 gatcggttacctacgaaaagcaatttggcaaaccatggcattttacctttggaggcgcggttgtgtgtttctggatgtgggaacgttgaagatgt 3196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 11207 - 11401
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    |||||||||||||||| ||||| |||| || ||| |||| ||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||| |||    
T  11207 gacatcacaggagcagacccagctacaccataatctggacttaatttggcataaacaggttcctctcaaagtatctatccttgcttggcgacttctcagg 11306  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||| ||||| ||| || || |||||| |||||| ||||||| ||| || |||||||| ||| ||||    
T  11307 gatcggttacctacaaaacttaatttggcaaaccgtggcattctatctgtggaggagcggttatgtgtttctggatgtgggaatgtcgaaaatgt 11401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 105845 - 106039
Alignment:
Q  16 gacatcacaggagcagccccagttacatcaaaatatggagttaattttgcataaacaggttcctatcaaagtctctatccttgcttggcgacttcttagg 115  Q
    ||||||||||||||||||||||||||| || ||| |||| ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||  | |||    
T  105845 gacatcacaggagcagccccagttacaccataatgtggacttaatttggcataaacaggtccctctcaaagtctctatccttgcttggcgactaatgagg 105944  T
Q  116 gatcagttacctacaaaaaataatttggcaaatcgtggtattttacctttggaggcgcggttgtgtgtttttggttgcgggaatgttgaagatgt 210  Q
    |||| |||||||||||||  |||||||||||||||||| ||| || || |||||| |||||| || |||  ||| || |||| ||| ||||||||    
T  105945 gatcggttacctacaaaacttaatttggcaaatcgtggcattctatctgtggaggagcggttatgcgttgctggatgtgggattgtcgaagatgt 106039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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