View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_415 (Length: 233)

Name: NF7829A_low_415
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_415
NF7829A_low_415
[»] chr4 (9 HSPs)
chr4 (25-222)||(40760945-40761142)
chr4 (27-222)||(52918043-52918238)
chr4 (25-222)||(38989252-38989449)
chr4 (25-222)||(45658070-45658268)
chr4 (26-222)||(13721882-13722078)
chr4 (25-222)||(40691530-40691727)
chr4 (25-222)||(55610243-55610433)
chr4 (85-222)||(11649068-11649205)
chr4 (122-222)||(53270769-53270868)
[»] chr7 (11 HSPs)
chr7 (25-222)||(35583613-35583810)
chr7 (25-222)||(33851452-33851649)
chr7 (25-222)||(110074-110271)
chr7 (25-222)||(15031155-15031352)
chr7 (25-222)||(29330827-29331024)
chr7 (25-222)||(38000011-38000208)
chr7 (25-157)||(41792594-41792726)
chr7 (25-128)||(7253821-7253924)
chr7 (117-222)||(43747858-43747963)
chr7 (170-222)||(7254089-7254141)
chr7 (167-210)||(22203367-22203410)
[»] chr6 (6 HSPs)
chr6 (25-222)||(13038296-13038493)
chr6 (25-222)||(29436299-29436496)
chr6 (25-222)||(34950260-34950457)
chr6 (26-143)||(12303907-12304023)
chr6 (84-163)||(20386692-20386771)
chr6 (117-178)||(33554183-33554244)
[»] chr1 (13 HSPs)
chr1 (25-222)||(39599596-39599793)
chr1 (25-222)||(4852745-4852942)
chr1 (25-222)||(10221794-10221991)
chr1 (25-222)||(10311248-10311445)
chr1 (25-222)||(5748405-5748602)
chr1 (27-219)||(18277904-18278096)
chr1 (25-222)||(7198585-7198782)
chr1 (64-222)||(7563151-7563309)
chr1 (25-222)||(50890393-50890590)
chr1 (25-222)||(17384454-17384651)
chr1 (25-222)||(30516889-30517086)
chr1 (102-186)||(15499935-15500019)
chr1 (165-222)||(22334148-22334205)
[»] chr3 (13 HSPs)
chr3 (27-222)||(3940001-3940196)
chr3 (25-222)||(44206261-44206458)
chr3 (27-222)||(21449215-21449409)
chr3 (32-222)||(41973187-41973377)
chr3 (25-218)||(49325866-49326059)
chr3 (25-214)||(47373320-47373508)
chr3 (25-222)||(8484978-8485174)
chr3 (36-222)||(48063603-48063790)
chr3 (25-216)||(21978439-21978631)
chr3 (25-216)||(22000870-22001062)
chr3 (25-210)||(9331922-9332107)
chr3 (25-215)||(18877422-18877600)
chr3 (25-75)||(22163054-22163104)
[»] chr2 (9 HSPs)
chr2 (26-222)||(5462934-5463130)
chr2 (25-219)||(15111900-15112094)
chr2 (26-222)||(5936891-5937087)
chr2 (27-215)||(18964721-18964909)
chr2 (25-222)||(34949880-34950077)
chr2 (84-185)||(33946243-33946344)
chr2 (84-149)||(2734623-2734688)
chr2 (117-198)||(41255518-41255599)
chr2 (114-162)||(42014750-42014798)
[»] chr5 (9 HSPs)
chr5 (25-203)||(24854467-24854645)
chr5 (25-202)||(6431185-6431362)
chr5 (25-219)||(41614912-41615106)
chr5 (25-211)||(31470723-31470909)
chr5 (25-161)||(5342631-5342767)
chr5 (26-203)||(27949900-27950077)
chr5 (84-199)||(10133541-10133656)
chr5 (84-162)||(8241664-8241742)
chr5 (84-185)||(28443674-28443775)
[»] chr8 (6 HSPs)
chr8 (25-208)||(24832144-24832327)
chr8 (32-218)||(10292-10478)
chr8 (85-222)||(41836057-41836194)
chr8 (84-185)||(16796064-16796165)
chr8 (84-163)||(12191382-12191461)
chr8 (84-163)||(12435810-12435889)
[»] scaffold0168 (1 HSPs)
scaffold0168 (25-222)||(16878-17075)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 40760945 - 40761142
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  40760945 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacaatgtcaccctctccgggctgaaggatgatttggatcaaatc 40761044  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||| ||| ||||| ||||| |||||||||||||||||| ||||| |||||||||||||||||||||    
T  40761045 aaccgtcaactcaaccacaaagacacgaggagggttgacggagttcaatatcgatgtccattatccgacttagccgaatctcttcgcttcagccggat 40761142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 52918043 - 52918238
Alignment:
Q  27 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 126  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||| ||||||||||| ||||||||||||||    
T  52918043 tagcgacagtctactacaacggtggaacaccaccccatctgtttaggattcgagaggatgtcaccctctccgggctgaaggatgagctggatcaaatcaa 52918142  T
Q  127 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||    
T  52918143 ccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctctttgcttcagccggat 52918238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 38989252 - 38989449
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||| | |||||||   ||| |||| ||||||||||| ||||||||||| ||||||||||||    
T  38989252 gctagcggcagtctactacaacggtggaacaccaccccatctatctaggattaacgacgatgtaaccctctccgggctgaaggatgagctggatcaaatc 38989351  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| || |||||| |||||||||||||||||||||||||    
T  38989352 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtctgactcatccggatctcttcgcttcagccggat 38989449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 45658070 - 45658268
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctg-tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaat 123  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||||| | ||||||||||| |||||||||||    
T  45658070 gctagcggcagtctactacaacggtggaacaccacccccatctgtttaggattcgagacgatgtcaccctctcctggctgaaggatgagctggatcaaat 45658169  T
Q  124 caaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||||||||||| ||||||| |||||    |||||||| | ||||||||||| |||||||||| || ||||||||||||||||||||||| ||||||||    
T  45658170 caaccgtcaactcaaccacagagacacatagagggtggtcggagttgaatatcgatgtccattgtctgactcagccggatctcttcgctttagccggat 45658268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 26 - 222
Target Start/End: Complemental strand, 13722078 - 13721882
Alignment:
Q  26 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 125  Q
    ||||| ||| ||||||||||||||||||||||||||  ||||||||||||||||||  |||||||||||||||  ||||||||| | |||||||||||||    
T  13722078 ctagcagcaatctactacaacggtggaacaccaccccatctgtttaggattcgagatgatgtcaccctctccgagctgaaggataagctggatcaaatca 13721979  T
Q  126 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || ||||||||| |||||| |||||||||||| |||||    
T  13721978 accgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgtccgactcaaccggatatcttcgcttcagtcggat 13721882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 40691530 - 40691727
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||| || ||||||||||||||| |||| |||||  ||||||||||||||||||| ||||||||||||||   ||||||||||| ||| ||||||||    
T  40691530 gctagcgacaatctactacaacggtgtaacatcaccccatctgtttaggattcgagacgatgtcaccctctccaagctgaaggatgagctgaatcaaatc 40691629  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || | ||||||| |||||||||||||||||||||||||    
T  40691630 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgttcgactcaaccggatctcttcgcttcagccggat 40691727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 55610243 - 55610433
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  | |||||||| ||| ||||||      
T  55610243 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggttaaaggatgagctgaatcaaa-- 55610340  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
         |||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||| |||||| ||||||||||||||||||||||||    
T  55610341 -----tcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccaactcagtcggatctcttcgcttcagccggat 55610433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 11649205 - 11649068
Alignment:
Q  85 tgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcca 184  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | | ||||||||| ||  ||||    
T  11649205 tgtcaccctcttcgggctgaaggatgagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggtcggtgttgaatatcgaattcca 11649106  T
Q  185 ttatccgactcagccggatctcttcgcttcagccggat 222  Q
    || ||||| |||||| ||||||| ||||||||||||||    
T  11649105 ttgtccgaatcagccagatctctacgcttcagccggat 11649068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 53270868 - 53270769
Alignment:
Q  122 atcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccgga 221  Q
    |||||||||||||| || |||| ||||| ||||| ||||| |  |||||||||| |||||||||| ||||||||| | ||| ||||||||||||||||||    
T  53270868 atcaaccgtcaactcaatcacagagacacgaggaaggtggtcgaagttgaatatcgatgtccattgtccgactcaactgga-ctcttcgcttcagccgga 53270770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 35583613 - 35583810
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||    
T  35583613 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccggactgaaggatgagttggatcaaatc 35583712  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||| ||||||| ||||||||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||| |||||||||||||| ||||||||    
T  35583713 aactgtcaactcaaccacaaagacaagaggagggtggtcggagttgaatatcgatgtccattgtccgactcagctggatctcttcgctttagccggat 35583810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 33851649 - 33851452
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  33851649 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 33851550  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||| |||||| |||||||||||| ||||||||||||||| ||||||    
T  33851549 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatatccattgtccgactcagccagatctcttcgcttcatccggat 33851452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 110271 - 110074
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||||| ||||| |||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  110271 gctagcggcggtctattacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 110172  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||| ||||| | ||||||| |||||||||||||    
T  110171 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgaatcagcagaatctctttgcttcagccggat 110074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 15031155 - 15031352
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||   |||||||||| ||| ||||||||    
T  15031155 gctagcggcagtctactacaacggtggaacaccaacccatctgtttaggattcgagacgatgtcaccctctccgagatgaaggatgagctgaatcaaatc 15031254  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||| ||||||| ||||||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  15031255 aactgtcaactcaaccacaaagacacgaggagggtggtcagagttgaatatcgatgtccgttgtccgactcaaccggatctcttcgcttcagccggat 15031352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 29330827 - 29331024
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||| ||||||||||||| ||||||||||||||||  ||||||||||||||||||| ||| |||||||||||| ||||||||||| ||||||||||||    
T  29330827 gctagcagcagtctactacagcggtggaacaccaccccatctgtttaggattcgagacgatgccaccctctccgggctgaaggatgagctggatcaaatc 29330926  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||| |||||| || |||||||||| ||||||||||| | ||||||||||| |||||||||  ||| ||||||||||||||| |||||||||| ||||    
T  29330927 aaccatcaactcaatcacaaagacacgaggagggtggtcggagttgaatatcgatgtccatcgtccaactcagccggatctcatcgcttcagctggat 29331024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 38000208 - 38000011
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||| ||||||||||||||||||||||||||  | ||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  38000208 gctagcggcaatctactacaacggtggaacaccaccccatttgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 38000109  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||||||||||  | |||||||||| ||| |||||||   ||||||||||| ||||| |||| ||||||||||||  |||||||||||||||||||||    
T  38000108 aaccgtcaactcgaacacaaagacacgagcagggtggttggagttgaatatcgatgttcattgtccgactcagccatatctcttcgcttcagccggat 38000011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 25 - 157
Target Start/End: Complemental strand, 41792726 - 41792594
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||| |||||||||||| |||||||||||||  | ||||||||||||||||| |||||||||||| ||| ||||||||||| || |||||||||    
T  41792726 gctagcggcaatctactacaacgatggaacaccaccccatatgtttaggattcgagacgatgtcaccctcttcgggctgaaggatgagctagatcaaatc 41792627  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagg 157  Q
    ||||||||||| ||||||||||||| |||||||    
T  41792626 aaccgtcaactcaaccacaaagacacgaggagg 41792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 25 - 128
Target Start/End: Original strand, 7253821 - 7253924
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||| ||| |||||||||||  ||||||||||     
T  7253821 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctcttcgggctgaaggatgagttggatcaaatt 7253920  T
Q  125 aacc 128  Q
    ||||    
T  7253921 aacc 7253924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 43747858 - 43747963
Alignment:
Q  117 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 216  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||| | | ||||||||| |||||||||| |||||||||| |  |||||||||||||||    
T  43747858 atcaaatcaaccgtcaactcaaccacaaagacacgaggagggtggtcggggttgaatatcgatgtccattgtccgactcagtcaaatctcttcgcttcag 43747957  T
Q  217 ccggat 222  Q
    ||||||    
T  43747958 ccggat 43747963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 7254089 - 7254141
Alignment:
Q  170 gaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||||| |||||||||| |||||||||||||||||||||||||||| ||||||    
T  7254089 gaatatcgatgtccattgtccgactcagccggatctcttcgcttcaaccggat 7254141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 210
Target Start/End: Original strand, 22203367 - 22203410
Alignment:
Q  167 gttgaatattgatgtccattatccgactcagccggatctcttcg 210  Q
    ||||||||| | |||||||| |||||||||||||||||||||||    
T  22203367 gttgaatatcgttgtccattgtccgactcagccggatctcttcg 22203410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 13038493 - 13038296
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||    
T  13038493 gctagcggcagtatactacaacggtggaacatcaccctgtctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaattc 13038394  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||    
T  13038393 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccagatctcttcgcttcagccggat 13038296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 29436496 - 29436299
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  |||||||||||  ||||||||| |    
T  29436496 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagttggatcaaagc 29436397  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||| ||| ||||||||||| | ||||||||||| ||||||  || |  |||||| |||||||||||||||||||||||||    
T  29436396 aaccgtcaactcaaccacaaacacacgaggagggtggtcggagttgaatatcgatgtctgttgtttgactcaaccggatctcttcgcttcagccggat 29436299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 34950457 - 34950260
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||| ||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||  || || ||||| ||||||||||||    
T  34950457 gctagcggaagtctactacaacggtggaacaccaccccatctatttaggattcgagacgatgtcaccctctccgagctaaatgatgagctggatcaaatc 34950358  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||| | || |||||| || |||||||||||||||||||||||||    
T  34950357 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgttcgttgtccgacacaaccggatctcttcgcttcagccggat 34950260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 12303907 - 12304023
Alignment:
Q  26 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 125  Q
    ||||||||||||||| | ||| | |||| |||||||  |||||||||||||||  || | |||||  |||| || ||||||||||| |||||||||||||    
T  12303907 ctagcggcagtctacaataacaggggaaaaccaccccatctgtttaggattcgcaacgacgtcactttctcggg-ctgaaggatgagctggatcaaatca 12304005  T
Q  126 accgtcaacttaaccaca 143  Q
    |||||||||| |||||||    
T  12304006 accgtcaactcaaccaca 12304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 163
Target Start/End: Original strand, 20386692 - 20386771
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 163  Q
    ||||||| ||||||||  |||||||| | || |||||||||||||||||||| ||||| | |||||  ||||| ||||||    
T  20386692 atgtcacgctctccgggttgaaggatcagctagatcaaatcaaccgtcaactcaaccatagagacacaaggagagtggac 20386771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 33554183 - 33554244
Alignment:
Q  117 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattga 178  Q
    ||||||||||||||||||| ||||| | |||||  ||||| |||||||| ||||| ||||||    
T  33554183 atcaaatcaaccgtcaactcaaccatagagacacaaggagagtggacagtgttgattattga 33554244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 39599793 - 39599596
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||  ||||||||||| ||||||||||||    
T  39599793 gctagcggcagtctactacaacggtggaacaccaccccgtttgtttaggatttgagacaatgtcaccctctccgagctgaaggatgagctggatcaaatc 39599694  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||| ||||| ||||||||||| | ||||||||||| ||||||| || ||||||||| |||||||||||||||||||||||||    
T  39599693 aaccgtcaactcaaccacagagacacgaggagggtggtcggagttgaatatcgatgtccgttgtccgactcaaccggatctcttcgcttcagccggat 39599596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 4852942 - 4852745
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  4852942 gctagcggcagtctactagaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 4852843  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||| ||||||| ||||||| ||||| |||||||||||  |||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  4852842 aactgtcaactcaaccacagagacacgaggagggtggttagagttgaatatcgatgtccattgtccgactcaaccggatctcttcgcttcagccggat 4852745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 10221794 - 10221991
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||||| ||||| |||||  ||||||||||||||  ||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  10221794 gctagcggctgtctattacaattgtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 10221893  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  10221894 aaccgtcaactcaaccacaaagacacgaggagggtggtcggggttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 10221991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 10311248 - 10311445
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||  |||||||||||||||  ||||||||||| ||||||||||||    
T  10311248 gctagcggcagtctactacaactgtggaacaccaccccatctgtttaggattcgagatgatgtcaccctctccgagctgaaggatgagctggatcaaatc 10311347  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||    
T  10311348 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtcctttgtctgactcatccggatctcttcgcttcagccggat 10311445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 5748405 - 5748602
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||| ||||||||||||||||||||||||||||||   ||||||||||||||||||| |||||||||||| ||  |||||||| || ||||||||||||    
T  5748405 gctagtggcagtctactacaacggtggaacaccaccgcatctgtttaggattcgagacgatgtcaccctcttcgagctgaaggaggagctggatcaaatc 5748504  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||| | ||||||||||||| |||||||||||  ||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||    
T  5748505 aaccgtcaattcaaccacaaagacacgaggagggtggttagagttgaatattgatgtccattgttcgactcagccggatctattcgcttcagccggat 5748602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 27 - 219
Target Start/End: Complemental strand, 18278096 - 18277904
Alignment:
Q  27 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 126  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||   |||||||| || | |||||||||||    
T  18278096 tagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagactatgtcaccctctccgtgttgaaggattattttgatcaaatcaa 18277997  T
Q  127 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 219  Q
    ||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||| |||||| |||||||||||||||    
T  18277996 ccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcatccggatatcttcgcttcagccg 18277904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 7198585 - 7198782
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||||||||||| ||||| |||||||| ||||||  |||||||| ||   ||||||||||    
T  7198585 gctagcggcagtatactacaacggtggaacactaccccatctgtttaggattggagacgatgtcaccatctccgagctgaaggacgagagggatcaaatc 7198684  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||| ||||||||| ||||||||||| ||||||||||||| ||||||| || ||||||||| ||||||||||| |||||||||||||    
T  7198685 aaccgtcaactcaactacaaagacacgaggagggtggtcagagttgaatatcgatgtccgttgtccgactcaaccggatctctttgcttcagccggat 7198782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 64 - 222
Target Start/End: Original strand, 7563151 - 7563309
Alignment:
Q  64 tctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 163  Q
    ||||||||||||||   || |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| ||||||||||| |    
T  7563151 tctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaaccacagagacacgaggagggtggtc 7563250  T
Q  164 agagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
     | ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||    
T  7563251 ggtgttgaatatcgatgtccattgtccgactcagtcggatctcttcgcttcagccggat 7563309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 50890590 - 50890393
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||| ||||| ||||| || || |||| |||||||  | |||||||||||||  || ||||||||||| | || ||||||||||||||||||||||||    
T  50890590 gctagcagcagtatactaaaatgggggaaaaccaccccatatgtttaggattcgcaacgatgtcaccctcactgggctgaaggatgatctggatcaaatc 50890491  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||| ||||| ||||||||||| | | ||||||||| |||||| ||| ||||||||||||||||||||||| |||||||||||    
T  50890490 aaccgtcaactcaaccacagagacacgaggagggtggtctgtgttgaatatcgatgtcaattgtccgactcagccggatctcttcggttcagccggat 50890393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 17384454 - 17384651
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||| || ||||||||||||||||| ||||||||||  ||||||||||||| |  || ||||||||||||| || ||||||| ||| ||||||||||||    
T  17384454 gctagtgggagtctactacaacggtgaaacaccaccccatctgtttaggatttgcaacgatgtcaccctctcagggctgaagggtgagctggatcaaatc 17384553  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    || |||||| | ||||||| ||||| ||||||||||| | | ||||||||| ||| ||||||  |||| ||| |||||||||||||||||||| ||||    
T  17384554 aatcgtcaaatcaaccacagagacacgaggagggtggtcggtgttgaatatcgatctccattgaccgaatcatccggatctcttcgcttcagcaggat 17384651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 30516889 - 30517086
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||||||||||||||||  || || | || ||||  ||||||||||||||   || |||||||||||||| | || |||||| | ||||||||||||    
T  30516889 gctagcggcagtctactacactggggggaaacaaccccatctgtttaggattcacaacgatgtcaccctctccaggctaaaggatcagctggatcaaatc 30516988  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||| | ||||| ||||||| ||||| |||||||||||   | ||||||||| |||||   || ||| ||||||    ||||||||| |||||||||||    
T  30516989 aactgccaactcaaccacagagacacgaggagggtggtatgtgttgaatatcgatgtttgttgtccaactcagtttcatctcttcggttcagccggat 30517086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 186
Target Start/End: Complemental strand, 15500019 - 15499935
Alignment:
Q  102 tgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccatt 186  Q
    |||||||| | ||| ||||||||||||||||||| |||||||||||||  |||||||||||| | ||||| ||| || |||||||    
T  15500019 tgaaggattagctgcatcaaatcaaccgtcaactcaaccacaaagacactaggagggtggacggtgttgagtatcgacgtccatt 15499935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 22334148 - 22334205
Alignment:
Q  165 gagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||| || |||||||||  |||||||||||||||||| |||||    
T  22334148 gagttgaatatcgatgtccgttgtccgactcaatcggatctcttcgcttcagtcggat 22334205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 3940001 - 3940196
Alignment:
Q  27 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 126  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||    
T  3940001 tagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatatcaccctctccggactgaaggatgagctggatcaaatcaa 3940100  T
Q  127 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||  ||||||||||||| ||||||||||| ||||||||||||| || ||||||| |||||||||| ||||||||||| |||| |||||||    
T  3940101 ccgtcaacacaaccacaaagacacgaggagggtggtcagagttgaatatcgacgtccattgtccgactcagtcggatctcttcacttcggccggat 3940196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 44206261 - 44206458
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  44206261 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 44206360  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||  |||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||| || || |||||| |||||||||||||||||||||||||    
T  44206361 aacaatcaactaaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccgttgtctgactcaaccggatctcttcgcttcagccggat 44206458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 21449215 - 21449409
Alignment:
Q  27 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 126  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||| ||||||||||||| |  |||||||||||  |||||||||||||    
T  21449215 tagcggcagtctactacaacggtgga-caccaccccatctgtttaggattcgagacgatgtcaccctctctgagctgaaggatgagatggatcaaatcaa 21449313  T
Q  127 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||| ||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  21449314 ccgacaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 21449409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 32 - 222
Target Start/End: Original strand, 41973187 - 41973377
Alignment:
Q  32 gcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtc 131  Q
    ||||||||||||||||||||||||||| |   |||||||| |||||||||| ||||| ||||||||||  |||||||||| |||||||||||||||||||    
T  41973187 gcagtctactacaacggtggaacaccatctcatctgtttaagattcgagacgatgtcgccctctccgggttgaaggatgagctggatcaaatcaaccgtc 41973286  T
Q  132 aacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||| ||||||||||||| |||||||||||   ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  41973287 aactcaaccacaaagacatgaggagggtggttggagttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcagccggat 41973377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 218
Target Start/End: Original strand, 49325866 - 49326059
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||| ||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||  || |||||||| ||||||||||||    
T  49325866 gctagcggcagtatactacaacggtggaacaccaccccatctgtttaggattcaagacgatgtcaccctctccgagcttaaggatgagctggatcaaatc 49325965  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagcc 218  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||| | || ||||||||| |||||||||||||||||||||    
T  49325966 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgttcgttgtccgactcaaccggatctcttcgcttcagcc 49326059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 25 - 214
Target Start/End: Original strand, 47373320 - 47373508
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||    
T  47373320 gctagcggcagtctactacaacggtggaacaccaccca-tctgtttaggattcgagacgatgtcaccctctccgggttgaaggatgagctggatcaaatc 47373418  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttc 214  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||| || ||| ||||||| ||  |||||||||||||||    
T  47373419 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatttctattgtccgacttagttggatctcttcgcttc 47373508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 25 - 222
Target Start/End: Original strand, 8484978 - 8485174
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||| |||   ||||||||||||||||||| |||| ||||||||  | ||||||||||| ||||||||| ||    
T  8484978 gctagcggcagtctactacaacggtggaacacaaccaa-tctgtttaggattcgagacgatgttaccctctctaggctgaaggatgagctggatcaagtc 8485076  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    ||||||||||| ||||||||||||| ||||||||||| | || ||||||||  ||||||||| |||||||||||||||||||||||||| ||||||||    
T  8485077 aaccgtcaactcaaccacaaagacacgaggagggtggtcggacttgaatataaatgtccattgtccgactcagccggatctcttcgctttagccggat 8485174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 36 - 222
Target Start/End: Complemental strand, 48063790 - 48063603
Alignment:
Q  36 tctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaact 135  Q
    ||||||||||||||||||||||| ||  ||||||||||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||||||||||    
T  48063790 tctactacaacggtggaacaccatcccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaact 48063691  T
Q  136 taaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactc-agccggatctcttcgcttcagccggat 222  Q
     ||||||||||||| ||||||||||  | ||||||||||| |||| || || |||||||| | |||||||||||||||||||||||||    
T  48063690 caaccacaaagacacgaggagggtgatcggagttgaatatcgatgcccgttgtccgactcaaaccggatctcttcgcttcagccggat 48063603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 21978439 - 21978631
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggat-tcgagacaatgtcaccctctccggactgaaggatgatctggatcaaat 123  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| || | |  || |||||||||||||| |||| |||||||| |||||||||||    
T  21978439 gctagcggcagtcttctacaacggtggaacaccaccctatctgtttagaatattgcaacgatgtcaccctctcccgactaaaggatgagctggatcaaat 21978538  T
Q  124 caaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 216  Q
    |||||||||||| |||| || ||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  21978539 caaccgtcaactcaaccgcagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcag 21978631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 25 - 216
Target Start/End: Original strand, 22000870 - 22001062
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggat-tcgagacaatgtcaccctctccggactgaaggatgatctggatcaaat 123  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| || | |  || |||||||||||||| |||| |||||||| |||||||||||    
T  22000870 gctagcggcagtcttctacaacggtggaacaccaccctatctgtttagaatattgcaacgatgtcaccctctcccgactaaaggatgagctggatcaaat 22000969  T
Q  124 caaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcag 216  Q
    |||||||||||| |||| || ||||| ||||||||||| | | ||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  22000970 caaccgtcaactcaaccgcagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatctcttcgcttcag 22001062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 9332107 - 9331922
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||| |||||||||||||||||||  |||||||  | |||||||||||||  || |||||||||||||||| ||||||||  | ||||||||||||    
T  9332107 gctagcggaagtctactacaacggtggagaaccaccccatttgtttaggattcgcaacgatgtcaccctctccgggctgaaggaccagctggatcaaatc 9332008  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcg 210  Q
    ||||||||||| ||| ||| ||||| ||||||||||| | | ||||||||| |||||||||| ||||||||||||||||| |||||    
T  9332007 aaccgtcaactcaactacagagacacgaggagggtggtcggtgttgaatatcgatgtccattgtccgactcagccggatcacttcg 9331922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 215
Target Start/End: Complemental strand, 18877600 - 18877422
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||||||||||||||||||||||||||| |||||  ||||||||||||| |  || || ||| ||||||| | || |||||||| ||||||||||||    
T  18877600 gctagcggcagtctactacaacggtggaacatcaccccatctgtttaggatttgcaacgatatcatcctctcccggctaaaggatgagctggatcaaatc 18877501  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttca 215  Q
    |||||            || ||||| ||||||||||| | | ||| ||||| |||||||||| ||||||||||||||||| ||| ||||||    
T  18877500 aaccg------------cagagacacgaggagggtggtcggtgttaaatatcgatgtccattttccgactcagccggatcgctttgcttca 18877422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 22163054 - 22163104
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggat 75  Q
    ||||||||||||||||||||| |||||||||||||||  ||||||||||||    
T  22163054 gctagcggcagtctactacaatggtggaacaccaccccatctgtttaggat 22163104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 5462934 - 5463130
Alignment:
Q  26 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 125  Q
    ||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||| ||||||||||| ||||||| ||| |    
T  5462934 ctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattctagacgatgtcaccctctccgggctgaaggatgagctggatcgaatta 5463033  T
Q  126 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||||||||| ||||||||||||| ||||||||||| | |||| |||||| |||||||||| ||||||||||||||| |||||||||||||||||||    
T  5463034 accgtcaactcaaccacaaagacacgaggagggtggtcggagtggaatatcgatgtccattgtccgactcagccggacctcttcgcttcagccggat 5463130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 15111900 - 15112094
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| |||||||||||  | |||||||||    
T  15111900 gctagcggtagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctgaaggatgagttagatcaaatc 15111999  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 219  Q
    ||| ||||||| ||||||| ||||| ||||||||||| ||||||| ||||||||||| |||| ||||||| | ||||||||||||||||||||||    
T  15112000 aactgtcaactcaaccacagagacacgaggagggtggtcagagtttaatattgatgttcattgtccgacttaaccggatctcttcgcttcagccg 15112094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 26 - 222
Target Start/End: Original strand, 5936891 - 5937087
Alignment:
Q  26 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 125  Q
    ||||||| ||||||||||||||||||||||||||||  ||||||||||||||   || |||||||||||||||| ||||||||||| |||||||||||||    
T  5936891 ctagcggtagtctactacaacggtggaacaccaccccatctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatca 5936990  T
Q  126 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    | |||||||| ||||||| |  || ||||||| ||| | | ||||||||| |||||||||| ||||||||||||| |||||||||||||| ||||||    
T  5936991 atcgtcaactcaaccacagaagcacgaggaggttggtcggtgttgaatatcgatgtccattgtccgactcagccgaatctcttcgcttcaaccggat 5937087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 18964909 - 18964721
Alignment:
Q  27 tagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaa 126  Q
    |||| ||||||||||||||||| |||| |||||||  ||||||||||||| | ||| ||||||||||||||||  ||||||||||  |||||||||||||    
T  18964909 tagctgcagtctactacaacgggggaaaaccacccaatctgtttaggatttgcgacgatgtcaccctctccgggatgaaggatgagttggatcaaatcaa 18964810  T
Q  127 ccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttca 215  Q
    ||||||||| ||||||||||||| |||||||||||     |||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  18964809 ccgtcaactcaaccacaaagacaggaggagggtggttgatgttgaatattgatgtccattgtccgactcagccggatctcttcgattca 18964721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 34950077 - 34949880
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||||| ||||||||||||||||||||||| |||||  ||||||||||||| |  || || ||||| ||||||| ||||||||||| ||||||||||||    
T  34950077 gctagcgacagtctactacaacggtggaacatcaccccatctgtttaggatttgcaacgatctcaccttctccgggctgaaggatgagctggatcaaatc 34949978  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    || |||||||| ||||||| ||||| ||| |||||||     ||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||    
T  34949977 aatcgtcaactcaaccacatagacacgagtagggtggttgttgttgaatatcgatgtccattgtccgactcaaccggatctcttcgcttcagccggat 34949880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 33946344 - 33946243
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 183  Q
    |||||||||||||| || |||||| | | ||||||||||||||||| ||| | ||| |||||||||   |||||||||| || ||||| ||| |||||||    
T  33946344 atgtcaccctctccagattgaagggtcagctggatcaaatcaaccgccaattcaactacaaagacacacggagggtggatagtgttgagtatcgatgtcc 33946245  T
Q  184 at 185  Q
    ||    
T  33946244 at 33946243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 2734688 - 2734623
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagaca 149  Q
    |||||||||||||| |  |||||| | | ||||||||||||||||||||||| ||| ||| |||||    
T  2734688 atgtcaccctctccaggttgaagggtcagctggatcaaatcaaccgtcaactcaactacagagaca 2734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 41255599 - 41255518
Alignment:
Q  117 atcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagc 198  Q
    ||||||||||||||||| | ||||||  |||||  ||||||||||| || ||||| ||| || |||||||  ||||||||||    
T  41255599 atcaaatcaaccgtcaaatgaaccacgtagacacaaggagggtggatagtgttgagtatcgacgtccattgaccgactcagc 41255518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 42014750 - 42014798
Alignment:
Q  114 tggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtgga 162  Q
    |||||||||||||||||||||| | ||||| |||||  |||||||||||    
T  42014750 tggatcaaatcaaccgtcaactcacccacagagacacaaggagggtgga 42014798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 25 - 203
Target Start/End: Original strand, 24854467 - 24854645
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||||||||    
T  24854467 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatc 24854566  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggat 203  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| ||||||||||||||||    
T  24854567 aaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggat 24854645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 202
Target Start/End: Original strand, 6431185 - 6431362
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  6431185 gctagcggcagtctactacaacggtggaacaccaccccatctatttaggattcgagacgatgtcaccctctccgggctgaaggatgagctggatcaaatc 6431284  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccgga 202  Q
    ||||||||||| ||||||||||||| ||||||||||| |  |||||||||| |||||||||| |||||||||| ||||    
T  6431285 aaccgtcaactcaaccacaaagacacgaggagggtggtcgaagttgaatatcgatgtccattgtccgactcagtcgga 6431362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 41614912 - 41615106
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||||   || ||||||||||||||||  |||||||||| ||||||||||||    
T  41614912 gctagcggcaatctactacaacggtggaacaccaccccatctgtttaggattcacaacgatgtcaccctctccgggatgaaggatgagctggatcaaatc 41615011  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccg 219  Q
    ||||||||||| |||||||||||||  |||||||||| | | ||||||||| ||||||||||  |||||||| ||||||||||||||||||||||    
T  41615012 aaccgtcaactcaaccacaaagacacaaggagggtggtcggtgttgaatatcgatgtccatttcccgactcaaccggatctcttcgcttcagccg 41615106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 31470723 - 31470909
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||| ||||||||| ||||||||||||||||||||||   ||||||||||||||  || |||||||||||||||  |||||||||||| |||||||||||    
T  31470723 gctatcggcagtcttctacaacggtggaacaccaccccaactgtttaggattcgcaacgatgtcaccctctccgagctgaaggatgatgtggatcaaatc 31470822  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgc 211  Q
    ||||||||||| |||| |||||||| ||||||||||| | | | ||||||  |||||||||| ||||||||||||||||||||||||    
T  31470823 aaccgtcaactcaaccgcaaagacacgaggagggtggtcggtgatgaataccgatgtccattgtccgactcagccggatctcttcgc 31470909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 5342631 - 5342767
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||  |||||||||| ||||||||||||    
T  5342631 gctagcggcaatctactacaacggtggaacaccaccccctctgtttaggattcgagacgatgtcaccctctccgggttgaaggatgaactggatcaaatc 5342730  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtgg 161  Q
    ||| ||||||| ||||||||||||| |||||||||||    
T  5342731 aactgtcaactcaaccacaaagacacgaggagggtgg 5342767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 26 - 203
Target Start/End: Complemental strand, 27950077 - 27949900
Alignment:
Q  26 ctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatca 125  Q
    |||||| || ||||||||||||  |||| |||||||  |||||||||||||||  || |||||||||| ||||  ||||||||| | |||||||||||||    
T  27950077 ctagcgacaatctactacaacgagggaaaaccaccccatctgtttaggattcgcaacgatgtcaccctttccgtgctgaaggatcagctggatcaaatca 27949978  T
Q  126 accgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggat 203  Q
    |||||||||| ||| ||| ||||| ||||| || || | | ||||||||| |||||||||| |||||||||| |||||    
T  27949977 accgtcaactcaactacagagacacgaggatggcggtcggtgttgaatatcgatgtccattgtccgactcagtcggat 27949900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 84 - 199
Target Start/End: Original strand, 10133541 - 10133656
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 183  Q
    |||||||| ||||| |  |||||||| | ||||||||||||||||| ||||| ||||||||||||| | |||||||||||   ||||| ||| ||  |||    
T  10133541 atgtcaccatctccaggttgaaggatcagctggatcaaatcaaccgccaactcaaccacaaagacacgcggagggtggacgatgttgagtatcgacatcc 10133640  T
Q  184 attatccgactcagcc 199  Q
    || | |||||||||||    
T  10133641 atcaaccgactcagcc 10133656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 84 - 162
Target Start/End: Original strand, 8241664 - 8241742
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtgga 162  Q
    |||||||||||| | |  |||||||| ||||||||||||||||||||||||| || |||| ||||| ||||| ||||||    
T  8241664 atgtcaccctctacaggttgaaggatcatctggatcaaatcaaccgtcaactcaatcacagagacacgaggatggtgga 8241742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 185
Target Start/End: Complemental strand, 28443775 - 28443674
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 183  Q
    |||||||| |||| ||  |||||||| | ||||||||||||||||  ||||| ||||||| ||||| | |||||||||||   ||||| ||| |||||||    
T  28443775 atgtcaccttctctgggttgaaggatcagctggatcaaatcaaccaccaactcaaccacagagacacgcggagggtggacgatgttgagtatcgatgtcc 28443676  T
Q  184 at 185  Q
    ||    
T  28443675 at 28443674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 25 - 208
Target Start/End: Complemental strand, 24832327 - 24832144
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    ||||| || ||||||||||||| |||||||| |||||  |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  24832327 gctagaggtagtctactacaacagtggaacagcaccccatctgtttaggattcgagacaatgtcaccctctccgggctgaaggatgagctggatcaaatc 24832228  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctctt 208  Q
    ||||||||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| |||||||||||||||||||||    
T  24832227 aaccgtcaactcaaccacaaagacatgaggagggtggtcggagttgaatatcgatgtccattgtccgactcagccggatctctt 24832144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 32 - 218
Target Start/End: Original strand, 10292 - 10478
Alignment:
Q  32 gcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtc 131  Q
    ||||||||||||||||||||||||||||||  ||| ||| ||||||||||| |||||||||||||||  ||||||||||| |||||||||||||||| ||    
T  10292 gcagtctactacaacggtggaacaccaccccatctattttggattcgagacgatgtcaccctctccgagctgaaggatgagctggatcaaatcaaccatc 10391  T
Q  132 aacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagcc 218  Q
    |||| ||||||||||||| ||||||||||| | ||||||||||| ||||||  || |||||||||  || |||||||||||||||||    
T  10392 aactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtctgttgtccgactcaatcgtatctcttcgcttcagcc 10478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 85 - 222
Target Start/End: Complemental strand, 41836194 - 41836057
Alignment:
Q  85 tgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcca 184  Q
    ||||||||||| ||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||| ||||||||||| | | ||||||||| ||  ||||    
T  41836194 tgtcaccctcttcgggctgaaggatgagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggtcggtgttgaatatcgaattcca 41836095  T
Q  185 ttatccgactcagccggatctcttcgcttcagccggat 222  Q
    || ||||| |||||| ||||||| ||||||||||||||    
T  41836094 ttgtccgaatcagccagatctctacgcttcagccggat 41836057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 16796064 - 16796165
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtcc 183  Q
    |||||||||||||||   |||||||| | ||||||||||||||| ||||||| ||||||| ||||| ||||||||||||| | ||||| |||||| ||||    
T  16796064 atgtcaccctctccgagttgaaggattagctggatcaaatcaactgtcaactcaaccacagagacatgaggagggtggacggtgttgagtattgacgtcc 16796163  T
Q  184 at 185  Q
    ||    
T  16796164 at 16796165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 12191461 - 12191382
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 163  Q
    |||||||| |||||||  | || ||| | ||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  12191461 atgtcaccttctccgggttaaatgatcagctggatcaaatcaaccgtcaattcaaccacaaagacacaaggagggtggac 12191382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 12435889 - 12435810
Alignment:
Q  84 atgtcaccctctccggactgaaggatgatctggatcaaatcaaccgtcaacttaaccacaaagacaagaggagggtggac 163  Q
    |||||||| |||||||  | || ||| | ||||||||||||||||||||| | |||||||||||||  ||||||||||||    
T  12435889 atgtcaccttctccgggttaaatgatcagctggatcaaatcaaccgtcaattcaaccacaaagacacaaggagggtggac 12435810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 25 - 222
Target Start/End: Complemental strand, 17075 - 16878
Alignment:
Q  25 gctagcggcagtctactacaacggtggaacaccaccctgtctgtttaggattcgagacaatgtcaccctctccggactgaaggatgatctggatcaaatc 124  Q
    |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||| || |||||||| ||||||||||||    
T  17075 gctagcggcagtctactacaacggtggaacaccaccccatctgtttaggattcgagacgatgtcaccctctccgggctaaaggatgagctggatcaaatc 16976  T
Q  125 aaccgtcaacttaaccacaaagacaagaggagggtggacagagttgaatattgatgtccattatccgactcagccggatctcttcgcttcagccggat 222  Q
    |||| |||||| ||||||||||||| ||||||||||| | ||||||||||| |||||||||| | | ||||| ||| ||||||| |||||||| ||||    
T  16975 aaccttcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtccattgtgcaactcaaccgaatctctttgcttcagctggat 16878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University