View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_418 (Length: 233)
Name: NF7829A_low_418
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_418 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 13 - 221
Target Start/End: Complemental strand, 25485678 - 25485470
Alignment:
| Q |
13 |
catcaatttagccttaaaaattttgtcagccccatatgcttcaagaatatgcttatctctcatgattatgattagtttacttcttgggtgaatgaacttg |
112 |
Q |
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||||| |||||||| ||||| || ||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||| || ||| |
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| T |
25485678 |
catcagtttagcctcaaaaacttcgtcagccccatatgcttgaagaatatgcttatctctagtgattatgattattttacttcttgggtgaagaaatttg |
25485579 |
T |
|
| Q |
113 |
ggttctatgtccaattcctctagttgttcaagttgctcaacattgtctagaacaatcaggagtcttagtttgcataacctatttctcatagtttgggata |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25485578 |
ggttctatgtccaatttctctagttgttcaagttgctcaacattgtcaagaacaatcaggagttttagtttgcataacctatttctcatagtttgggata |
25485479 |
T |
|
| Q |
213 |
tttttcgag |
221 |
Q |
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|||| |||| |
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| T |
25485478 |
ttttacgag |
25485470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 25435208 - 25435411
Alignment:
| Q |
13 |
catcaatttagccttaaaaattttgtcagccccatatgcttcaagaatatgcttatctctcatgattatgattagtttacttcttgggtgaatgaacttg |
112 |
Q |
| |
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|||||||||||||| ||||| || || || |||||||||| |||||||||||||||||| ||||| ||||| | ||||| ||| |||| ||| ||| |
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| T |
25435208 |
catcaatttagcctcaaaaacttcatctgctccatatgcttgaagaatatgcttatctctagtgattgcgattattctactttttgtatgaaggaatttg |
25435307 |
T |
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| Q |
113 |
ggttctatgtccaattcctctagttgttcaagttgctcaacattgtctagaacaatcaggagtcttagtttgcataacctatttctcatagtttgggata |
212 |
Q |
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|||| ||||||||||||||||||||| |||| |||||| |||||||||||||| || |||||| ||| || | || |||||||||||| ||||||||| |
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| T |
25435308 |
ggttttatgtccaattcctctagttgctcaatttgctcgacattgtctagaactataaggagttttatcttccgtagcctatttctcattatttgggata |
25435407 |
T |
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| Q |
213 |
tttt |
216 |
Q |
| |
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|||| |
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| T |
25435408 |
tttt |
25435411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 213
Target Start/End: Complemental strand, 25446711 - 25446542
Alignment:
| Q |
44 |
ccatatgcttcaagaatatgcttatctctcatgattatgattagtttacttcttgggtgaatgaacttgggttctatgtccaattcctctagttgttcaa |
143 |
Q |
| |
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|||||||||| |||||||||||||||||| |||| |||||| | |||||| | ||||| ||| ||||| ||||||||||||||||||||| || | |
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| T |
25446711 |
ccatatgcttgaagaatatgcttatctctagcgattgtgattattctacttccagtgtgaaggaatacgggttgtatgtccaattcctctagttgctcca |
25446612 |
T |
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| Q |
144 |
gttgctcaacattgtctagaacaatcaggagtcttagtttgcataacctatttctcatagtttgggatat |
213 |
Q |
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| || ||||||||||| ||||| || |||||| | | |||||||| ||| |||| |||| |||||||||| |
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| T |
25446611 |
gctgttcaacattgtcaagaactataaggagtttaattttgcatagcctgtttcgcataatttgggatat |
25446542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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