View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_42 (Length: 424)
Name: NF7829A_low_42
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 39481182 - 39481592
Alignment:
| Q |
1 |
tcaggattcttttgtaggtactcgagctcatactcagttaactgagctgcgaaaccgtccattgcggaacggtaagagtagagaaggcgagaagaagggt |
100 |
Q |
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| T |
39481182 |
tcaggattcttttgtaggtactcgagctcatactcagttaactgagctgcgaaaccgtccattgcggaacggtaagagtagagaaggcgagaagaagggt |
39481281 |
T |
|
| Q |
101 |
cttcatcagatgaaatggtttgttgtataaacgaaaggtgccattcaagattggaggtgaacaaagacttggttgtgccatgagggtgtaattgaacaat |
200 |
Q |
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| T |
39481282 |
cttcatcagatgaaatggtttgttgtataaatgaaaggtgccattcaagattggaggtgaacaaagacttggttgtgccatgagggtgtaattgaacaat |
39481381 |
T |
|
| Q |
201 |
ataagttccaagagtctgtgcatggatggtgagaatgaggaggaaaagggtgaggaaaaagagttgaaatttggattccatt-ggtttttgttgttgtag |
299 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
39481382 |
ataagttccaagagtctgtgcatggatgttgagaatgaggaggaaaagggtgaggaaaaagagttgaaatttggattccattgggtttttgttgttgtag |
39481481 |
T |
|
| Q |
300 |
taatagaagaatgtgttgta-ggttgcatgattttgtggtggaattggaggggtatttgaaggtgttgaggaagaattcaaatgtgaactagctaagcgt |
398 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
39481482 |
tagtagaagaatgtgttgtagggttgcatgattttgtggtggaattggaggggtatttgaaggtgttgaggaagaattcaaatgtgaactaggtaagcgt |
39481581 |
T |
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| Q |
399 |
ttgttgatgtc |
409 |
Q |
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| T |
39481582 |
ttgttgatgtc |
39481592 |
T |
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