View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_421 (Length: 232)

Name: NF7829A_low_421
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_421
NF7829A_low_421
[»] chr4 (10 HSPs)
chr4 (42-222)||(40761207-40761387)
chr4 (42-217)||(44109091-44109266)
chr4 (42-217)||(38989519-38989694)
chr4 (42-217)||(52918308-52918483)
chr4 (42-216)||(40691798-40691972)
chr4 (42-217)||(53270524-53270699)
chr4 (61-217)||(55610503-55610659)
chr4 (41-217)||(11648825-11648998)
chr4 (49-108)||(45658356-45658415)
chr4 (140-217)||(45658282-45658360)
[»] chr3 (12 HSPs)
chr3 (42-222)||(49326128-49326308)
chr3 (42-217)||(44206528-44206703)
chr3 (42-217)||(41973447-41973622)
chr3 (42-217)||(21449476-21449650)
chr3 (42-202)||(48063363-48063523)
chr3 (42-217)||(18877170-18877345)
chr3 (42-217)||(47373586-47373761)
chr3 (44-217)||(21978707-21978880)
chr3 (44-217)||(22001138-22001311)
chr3 (67-217)||(3940266-3940416)
chr3 (42-202)||(8485259-8485419)
chr3 (42-218)||(9331668-9331841)
[»] chr1 (11 HSPs)
chr1 (42-217)||(22334275-22334450)
chr1 (42-217)||(10311515-10311690)
chr1 (42-217)||(18277656-18277831)
chr1 (42-222)||(4852501-4852680)
chr1 (42-217)||(5748669-5748844)
chr1 (42-202)||(39599351-39599511)
chr1 (42-218)||(10222060-10222236)
chr1 (91-216)||(7198850-7198975)
chr1 (42-202)||(17384735-17384892)
chr1 (42-222)||(30517151-30517328)
chr1 (42-217)||(7563379-7563551)
[»] chr8 (4 HSPs)
chr8 (42-217)||(10552-10727)
chr8 (86-218)||(24831934-24832066)
chr8 (41-217)||(41835814-41835987)
chr8 (115-217)||(16796272-16796374)
[»] chr7 (12 HSPs)
chr7 (42-217)||(109829-110004)
chr7 (42-222)||(26793126-26793306)
chr7 (42-202)||(38256344-38256504)
chr7 (42-202)||(38263919-38264079)
chr7 (42-217)||(33851207-33851382)
chr7 (42-217)||(7254211-7254386)
chr7 (42-217)||(15031422-15031597)
chr7 (42-217)||(29331094-29331269)
chr7 (42-217)||(35583880-35584055)
chr7 (43-202)||(37999767-37999926)
chr7 (42-202)||(22203507-22203664)
chr7 (42-202)||(43748045-43748193)
[»] chr6 (6 HSPs)
chr6 (42-217)||(13038051-13038226)
chr6 (42-217)||(34950016-34950190)
chr6 (42-197)||(12304084-12304236)
chr6 (155-197)||(29436164-29436206)
chr6 (136-217)||(19626534-19626615)
chr6 (81-184)||(20386933-20387033)
[»] scaffold0168 (1 HSPs)
scaffold0168 (42-216)||(16633-16807)
[»] chr2 (6 HSPs)
chr2 (42-217)||(5463200-5463375)
chr2 (42-217)||(15112164-15112339)
chr2 (42-217)||(5937154-5937329)
chr2 (42-217)||(34949635-34949810)
chr2 (42-216)||(18964472-18964643)
chr2 (136-217)||(37126759-37126840)
[»] chr5 (9 HSPs)
chr5 (42-217)||(24854715-24854890)
chr5 (65-217)||(31470988-31471137)
chr5 (42-124)||(6431360-6431442)
chr5 (68-217)||(27949684-27949830)
chr5 (42-100)||(5342771-5342829)
chr5 (50-217)||(41615182-41615346)
chr5 (131-217)||(28335602-28335688)
chr5 (136-191)||(27689172-27689227)
chr5 (122-222)||(10133744-10133844)
[»] scaffold0001 (1 HSPs)
scaffold0001 (140-217)||(426107-426184)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 40761387 - 40761207
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |||||    
T  40761387 acaacataaaacacacgattaagtaaaacatagcacattatcacgaatcatctaaactaacttcttcctcctctggtccctctagcaaagcccgaatctc 40761288  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatcaatcc 222  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||    
T  40761287 ttcgtagttcctggttcggtgcaaacttttcagaatttgttcagcaaatctaaccaacgaaaagtccaactcgatcgatcc 40761207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 44109091 - 44109266
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44109091 acaacataaaacacacgattaattaaaacaaagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 44109190  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  44109191 ttcgtagttcctggtcaggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 44109266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 38989694 - 38989519
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38989694 acaacataaaacacgcaattaagtaaaacatagcacattatcatggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 38989595  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  38989594 ttcgtagttcctagtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 38989519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 52918483 - 52918308
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||| ||||||    
T  52918483 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctactctcgtccctccagcatagccctgatctc 52918384  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||   ||||||||||||    
T  52918383 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatataaccaacgaagcgtccaactcgatc 52918308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 216
Target Start/End: Complemental strand, 40691972 - 40691798
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40691972 acaacataaaacacgcgattaagtaaaacatagcacatgatcacggatcatctaaactaacttcttcctcctctggtccctcaagcagagcccggatctc 40691873  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgat 216  Q
     ||||||||||||||||||||||||||||||| |||||||| || | ||||||||||||||   |||||||||||    
T  40691872 atcgtagttcctggtccggtgcaaacttttcagaatttgttaagtatatctaaccaacgaagcgtccaactcgat 40691798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 53270524 - 53270699
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||| | |||    
T  53270524 acaacataaaacacacgattaattaaaacatagcacattataacggaccatctaaactaacttcttccttcgctggtccctccagcagagcccgaagctc 53270623  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||| ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  53270624 ttcttagttcctggtccggtgcaaatttttcagaatttgttcagcatatctaaccaacgaagcgtccaactcgatc 53270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 61 - 217
Target Start/End: Complemental strand, 55610659 - 55610503
Alignment:
Q  61 taagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccgg 160  Q
    ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||    
T  55610659 taagtaaaagatagcacattatcacggatcatctaaactaatttcttcctcctctagtccctccagcagagcccgaatctcttcgtagttcctggcccgg 55610560  T
Q  161 tgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  55610559 tgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 55610503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 11648825 - 11648998
Alignment:
Q  41 tacaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatct 140  Q
    ||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||  || ||    
T  11648825 tacaatataaaatacgcgattaattaaaacatagcacattatcacggatcatctaaactaccttcttcct---ctggtccctccagcagagccttgagct 11648921  T
Q  141 cttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||| ||||||| || |||||||||||||| |||||||||||||  |||||||||||||   ||||||||||||    
T  11648922 cttcgtatttcctgggccagtgcaaacttttcagaatttgttcagcatttctaaccaacgaagcgtccaactcgatc 11648998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 108
Target Start/End: Complemental strand, 45658415 - 45658356
Alignment:
Q  49 aaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttc 108  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  45658415 aaaacacacgattaattaaaacatagcacattatcacggatcatctaaactaatttcttc 45658356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 45658360 - 45658282
Alignment:
Q  140 tcttcgtagttcctggtccggtgcaaacttttca-aaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||   ||||||||||||    
T  45658360 tcttcgtagttcctggttcggtgcaaacttttcagaaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 45658282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 49326308 - 49326128
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49326308 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 49326209  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatcaatcc 222  Q
    ||||||||||||||||||||||||||||| || ||||||||||||| || ||||||||||||  |||| ||||||| ||||    
T  49326208 ttcgtagttcctggtccggtgcaaactttccagaatttgttcagcagatataaccaacgaaacgtccagctcgatcgatcc 49326128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 44206703 - 44206528
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44206703 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatctaaactaacttctacctcctctggtccctccagcagagcccggatctc 44206604  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||   ||||||||||||    
T  44206603 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacaaagcgtccaactcgatc 44206528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 41973622 - 41973447
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  41973622 acaacataaaacacgtgattaagtaaaacatatcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccgaatctc 41973523  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  41973522 ttcgtagttcctggtccggtgcaaaattttcagaatttgttcagcagatctaaccaacgaagcttccaactcgatc 41973447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 21449650 - 21449476
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||    
T  21449650 acaacataaaacacgcgattaagtaaaacataacacattatcacggatcatctaaactaacttcttcctcctctg-tccctctagcagagcccgaatctc 21449552  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||||||||||||||  |||||||||| || |||||||||||||||  ||||||||||||    
T  21449551 ttcgtagttcctggtccggtgcaaacttttcggaatttgttcaacatatctaaccaacgaaacgtccaactcgatc 21449476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 48063363 - 48063523
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48063363 acaacataaaacacgcgattaagtaaaacataacatactatcacagatcatctaaactaacttcttcctcctctggtccctccatcagagcccggatctc 48063462  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||||| ||||||||||||||    
T  48063463 ttcgtagttcctggtccgatgcaaacttttcagaattttttcagcagatctaaccaacgaa 48063523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 18877170 - 18877345
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||| ||||||    
T  18877170 acaacataaaacacgcgattaattaaaacatagcacattatcacggatcatctaaactaactacttcctcctctagtccctcccgcagagccctgatctc 18877269  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||| || |||||||||||||| ||||||||||||| |||||||| | |||   ||||||||||||    
T  18877270 ttcgtagttcctgggccagtgcaaacttttcagaatttgttcagcagatctaacctatgaagcgtccaactcgatc 18877345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 47373761 - 47373586
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  47373761 acaacataaaacacgtgattaagtaaaacatagcacattatcatggatcgtctaaactaactacttcctcctctgttccctccagcagagctcggatctc 47373662  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||||| |||||||| |||||   ||||||||||||    
T  47373661 ttcgtagttcctggtctggtgcaaacttttcagaattttttcagcagatctaacccacgaagcgtccaactcgatc 47373586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 21978880 - 21978707
Alignment:
Q  44 aacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctctt 143  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||    
T  21978880 aacataaaacacgcgattaatgaaaacatagcatattatcacggatcatctaaactaacttcttcctcctctaatccctccagcagagacctgatctctt 21978781  T
Q  144 cgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  21978780 cgtagttcctgggccagtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 21978707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 44 - 217
Target Start/End: Complemental strand, 22001311 - 22001138
Alignment:
Q  44 aacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctctt 143  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||| || ||||||||    
T  22001311 aacataaaacacgcgattaatgaaaacatagcatattatcacggatcatctaaactaacttcttcctcctctaatccctccagcagagacctgatctctt 22001212  T
Q  144 cgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||| || |||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  22001211 cgtagttcctgggccagtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 22001138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 3940416 - 3940266
Alignment:
Q  67 aaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccggtgcaaa 166  Q
    ||||||| |||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3940416 aaacataacacattatcaccaatcatctaaacaaacttcttcctcctctggtccctccagcagagcccgtatctcttcgtagttcctagtccggtgcaaa 3940317  T
Q  167 cttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||| ||||||||||||| ||||||| ||||||  |||||||||||||    
T  3940316 cttttcagaatttgttcagcagatctaacaaacgaagcatccaactcgatc 3940266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 8485419 - 8485259
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  8485419 acaacataaaacacacgattaattaaagcatagaacattgtcacggatcatctaaactaactttttcctcctctagtccctccagtagagcccggatctc 8485320  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    |  | |||||||||||| |||||||||||||| |||||||||| || ||||||||||||||    
T  8485319 tcggaagttcctggtccagtgcaaacttttcagaatttgttcaacagatctaaccaacgaa 8485259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 42 - 218
Target Start/End: Original strand, 9331668 - 9331841
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||   |||||||| |||||||| || |||| ||||||    
T  9331668 acaacataaaacacgcgattaattaaaacatagcacattatcacagataatctaaactaacttct---tcctctgggccctccagtagtgccctgatctc 9331764  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatca 218  Q
     | ||||||||||| ||||  ||||||||| | |||||||||| || | ||||||||||||  ||||||||||||||    
T  9331765 cttgtagttcctgggccggatcaaactttttagaatttgttcaacatacctaaccaacgaagcatccaactcgatca 9331841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 144; Significance: 7e-76; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 22334450 - 22334275
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  22334450 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggttcctccagcagagcccggatctc 22334351  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  22334350 ttcgtagttcatggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 22334275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 10311690 - 10311515
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||    
T  10311690 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatataaacaaacttcttcctcctctggtccctccagcagagcctggatctc 10311591  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||  |||||||||||||    
T  10311590 ttcgtagttcctagtccggtgcaaacttttcataatttgttcagcagatctaaccaacgaagcatccaactcgatc 10311515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 18277656 - 18277831
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18277656 acaacataaaacatgcgattaagtaaaacataacacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 18277755  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  18277756 ttcgtagttcctggttcggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 18277831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 4852501 - 4852680
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  4852501 acaacataaaacacgtgattaattaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggt-cctccagcagagcccgaatctc 4852599  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatcaatcc 222  Q
    |||||||||| ||||||||||||||||||||| |||||||| |||| ||||||||||||||   |||||||||||| ||||    
T  4852600 ttcgtagttcatggtccggtgcaaacttttcagaatttgtttagcagatctaaccaacgaagcgtccaactcgatcgatcc 4852680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 5748844 - 5748669
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5748844 acaacataaaacacgcgattaattaaaacacagcacattatcatggatcatctaaactaacttcttcttcctctggtccctccagcagagcccggatctc 5748745  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||| |||| ||||||||||||||||  ||||||||||||| ||||||||||||||   ||||||||||||    
T  5748744 ttcgtagtttctggcccggtgcaaacttttccgaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 5748669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 39599351 - 39599511
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  |||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  39599351 acaacataaaacacgtgattaattaaaacatagcacattttcacggatcatctaaactaacttcttcctcccctggtccctccagcagagcccgaatctc 39599450  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    ||||||||||||||||| ||||||| |||||| |||||||||| || ||||||||||||||    
T  39599451 ttcgtagttcctggtccagtgcaaaattttcagaatttgttcaacagatctaaccaacgaa 39599511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 218
Target Start/End: Complemental strand, 10222236 - 10222060
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||||| ||||||||  ||||||||||||||    
T  10222236 acaacataaaacacgcgattaagtgaaacatatcacattgtcacggatcatctaaactaatttcttcctcctctgatccctccaatagagcccggatctc 10222137  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatca 218  Q
    || ||||||||||||||||||||||||||| |  ||||||||| || ||||||||||| ||   |||||||||||||    
T  10222136 tttgtagttcctggtccggtgcaaactttttagtatttgttcatcagatctaaccaacaaagcgtccaactcgatca 10222060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 7198975 - 7198850
Alignment:
Q  91 atctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaat 190  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||| ||    
T  7198975 atctaaactaacttcctcctcctctggtccctccagcagagcccggatctcttcgtagttcctgctccggtgcaaagttttcagaatttgttcagcagat 7198876  T
Q  191 ctaaccaacgaaaaatccaactcgat 216  Q
    ||||||||||||   |||||||||||    
T  7198875 ctaaccaacgaagcgtccaactcgat 7198850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 17384892 - 17384735
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||||   |||||||| ||||||||||| ||| ||    
T  17384892 acaacataaaacacgcaattaattaaaacatagcacattatcacagatcatctaaactaacttcttcctc---tggtcccttcagcagagccctgatatc 17384796  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    |||||||| ||||| ||| |||||| |||||| |||||||||| || ||||||||||||||    
T  17384795 ttcgtagtgcctgggccgttgcaaaattttcagaatttgttcaacatatctaaccaacgaa 17384735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 222
Target Start/End: Complemental strand, 30517328 - 30517151
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  |||||| ||||||||  ||||||||||||||||| |||||||||  || || ||   |||||||||||||||||||  ||||||    
T  30517328 acaacataaaacacgtgattaattaaaacatgacacattatcacggatcacctaaactaatatcgtcatc---tggtccctccagcagagccgtgatctc 30517232  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatcaatcc 222  Q
    ||||||||||||||  |||| |||| |||||| ||||||||||||| |||||||||| |||   |||||||||||| ||||    
T  30517231 ttcgtagttcctgggtcggttcaaatttttcagaatttgttcagcagatctaaccaatgaagcgtccaactcgatcgatcc 30517151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 7563551 - 7563379
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||| |||||  ||||||| ||||||||| ||||||||||| ||||||||||| ||| |||||| ||   ||||   || || || |||| ||||||    
T  7563551 acaacatgaaacatgcgattaattaaaacataacacattatcacagatcatctaaattaatttcttcgtctggtggt---tctaggagtgccctgatctc 7563455  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||| || |||  |||| |||||| | || ||||||||||||| |||||||||||||||  ||||||||||||    
T  7563454 ttcgtagatcatgggtcggttcaaactatccataatttgttcagcagatctaaccaacgaaacgtccaactcgatc 7563379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 10727 - 10552
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||    
T  10727 acaacataaaacacacgattaagtaaaacataacacattatcacggatcatctaaactaacttattcctcctcttgtccctccagcagagcccgaatctc 10628  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||||||||    
T  10627 ttcgtatttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaaacgtccaactcgatc 10552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 86 - 218
Target Start/End: Original strand, 24831934 - 24832066
Alignment:
Q  86 ggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcag 185  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24831934 ggatcatctaaactaacttcttcctcctctggtccctctagcagagcccgaatctcttcgtagttcctggtccggtgcaaacttttcagaatttgttcag 24832033  T
Q  186 caaatctaaccaacgaaaaatccaactcgatca 218  Q
    |||||||||||||||||   |||||||||||||    
T  24832034 caaatctaaccaacgaagtgtccaactcgatca 24832066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 217
Target Start/End: Original strand, 41835814 - 41835987
Alignment:
Q  41 tacaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatct 140  Q
    ||||| |||||| || ||||||| |||||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||||||||||  || ||    
T  41835814 tacaatataaaatacgcgattaattaaaacatagcacattatcacggatcatctaaactaccttcttcct---ctggtccctccagcagagccttgagct 41835910  T
Q  141 cttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||| ||||||| || |||||||||||||| |||||||||||||  |||||||||||||   ||||||||||||    
T  41835911 cttcgtatttcctgggccagtgcaaacttttcagaatttgttcagcatttctaaccaacgaagcgtccaactcgatc 41835987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 217
Target Start/End: Complemental strand, 16796374 - 16796272
Alignment:
Q  115 tggtccctccagcagagcccggatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcg 214  Q
    |||||||||||||||||| | |||||||||||| |||||   ||||  |||||||||   ||||| |||| || |||| |||||||||   |||||||||    
T  16796374 tggtccctccagcagagcactgatctcttcgtaattcctaagccggatcaaacttttatgaatttcttcaacagatctgaccaacgaagcgtccaactcg 16796275  T
Q  215 atc 217  Q
    |||    
T  16796274 atc 16796272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 109829 - 110004
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  109829 acaacataaaacacgtgattaagtaaaacatagtacattatcatggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 109928  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  109929 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 110004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 222
Target Start/End: Original strand, 26793126 - 26793306
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26793126 acaacataaaacacgcgattaagtaaaacataacacattatcacgaaccatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 26793225  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatcaatcc 222  Q
    |||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||   |||||||||||| ||||    
T  26793226 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcaacagatctaaccaacgaagcgtccaactcgatcgatcc 26793306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 38256504 - 38256344
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38256504 acaacataaaacacgcgattaagtaaaacatagcacattatcacagatcatctaaactaacttcttcctcctctggtccctcaagcagagcccggatctc 38256405  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  38256404 ttcgtggttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaa 38256344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 38264079 - 38263919
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  38264079 acaacataaaacacgcgattaagtaaaacatagcacattatcacagatcatctaaactaacttcttcctcctctggtccctcaagcagagcccggatctc 38263980  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  38263979 ttcgtggttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaa 38263919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 33851207 - 33851382
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  33851207 acaacataaaacacgcgattaagtaaaacatagcacattatcacagatcatctaaactaacttcctcctcctctggtccctccagcagagcccggatctc 33851306  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||| ||||||||||||| ||||||||||||  ||||||||||||||   ||||||||||||    
T  33851307 ttcgtagttcctggtccgatgcaaacttttcagaatttgttcagccgatctaaccaacgaagcgtccaactcgatc 33851382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 7254386 - 7254211
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||||    
T  7254386 acaacataaaacacgcgattaagtaaaacatagcacgttatcacggatcatataaactaacttcttcctcctctggtcccttcaacagagcccgaatctc 7254287  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||   ||||||||||||    
T  7254286 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaactaacgaagtgtccaactcgatc 7254211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 15031597 - 15031422
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| |||||    
T  15031597 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctcaagtccctctagcagagcccgaatctc 15031498  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||   ||||||||||||    
T  15031497 ttcgtagttcctggtccagtgcaaacttttcagaatttgttcagcagatctaaccgacgaagcgtccaactcgatc 15031422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 29331269 - 29331094
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  29331269 acaacataaaacacgggattaagtaaaacatagcacattatcacggatcatctaaactaacttcatcctcctctggtccctccagcagagcccgaatctc 29331170  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||| ||| ||||||||||||||||| |||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  29331169 ttcatagatcctggtccggtgcaaaattttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 29331094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 35584055 - 35583880
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||    
T  35584055 acaacataaaacacgcgattaagtaaaacataacacattatcacggatcatctaaactaacttcctcctcctctggtccctctagcagagcccagatctc 35583956  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| |||||||| |||||   ||||||||||||    
T  35583955 ttcgtagttcctggtcaggtgcaaacttttcagaatttgttcagcagatctaacctacgaagcgtccaactcgatc 35583880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 37999767 - 37999926
Alignment:
Q  43 caacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctct 142  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||     
T  37999767 caacataaaacacacgattaattaaaacatagcacattagcacggatcatctaaactaacttcctcctcctctggtccctccagcagagcctggaactcc 37999866  T
Q  143 tcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    | ||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  37999867 ttgtagttcctggtccggtgcaaacttttcagaatttgttctgcagatctaaccaacgaa 37999926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 22203664 - 22203507
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||  | ||||| |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||||    
T  22203664 acaacataaaacatgcaattaattaaaacatagcacattatcacggatcatctaaactaacttcttcctc---tggtccctccagcagagccctgatctc 22203568  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    |||||||||||||| ||||  |||||||||   ||||||||||||| ||||||||||||||    
T  22203567 ttcgtagttcctgggccggatcaaactttttttaatttgttcagcagatctaaccaacgaa 22203507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 202
Target Start/End: Complemental strand, 43748193 - 43748045
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |            ||||||||||  |||||    
T  43748193 acaacataaaatacacaattaagtaaaacatagcacattatcacgaatcatttaaactaacttattccttc------------agcagagcccatatctc 43748106  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaa 202  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||    
T  43748105 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatccaaccaacgaa 43748045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 4e-71; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 13038051 - 13038226
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||| ||||||    
T  13038051 acaacataaaacacacgattatgtaaaacatagcacattatcacggatcatctaaactaacttcttccccctttggtccctccagtagagcccagatctc 13038150  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  13038151 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 13038226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 34950016 - 34950190
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34950016 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcat-taaactaacttcttcctgctctggtccctccagcagagcccggatctc 34950114  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  34950115 ttcgtagttcctggtccagtgcaaacttttcagaatttgttcagcatatctaaccaacgaagcgtccaactcgatc 34950190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 12304236 - 12304084
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||   |||||||||||||||||||||||| ||||||    
T  12304236 acaacataaaacacacgattaattaaaacatagcacattatcacagataatctaaactaacttctt---cctctggtccctccagcagagccctgatctc 12304140  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaacca 197  Q
    |||||||||||||| ||||  |||| ||||    |||||||||||| |||||||||    
T  12304139 ttcgtagttcctgggccggatcaaatttttttttatttgttcagcagatctaacca 12304084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 197
Target Start/End: Original strand, 29436164 - 29436206
Alignment:
Q  155 gtccggtgcaaacttttcaaaatttgttcagcaaatctaacca 197  Q
    ||||||||||||||||||| ||||||||||||| |||||||||    
T  29436164 gtccggtgcaaacttttcagaatttgttcagcagatctaacca 29436206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 19626534 - 19626615
Alignment:
Q  136 gatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||| | ||||  |||||||||   |||||||||| || |||| |||||||||   ||||||||||||    
T  19626534 gatctcttcgtagttcctaggccggatcaaacttttatgaatttgttcaacagatctgaccaacgaagcgtccaactcgatc 19626615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 184
Target Start/End: Complemental strand, 20387033 - 20386933
Alignment:
Q  81 atcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccggtgcaaacttttcaaaatttg 180  Q
    ||||||||||| |||||||||  ||||| ||   |||| | |||||||| |||| ||||||||||||||||||||  |||  |||| |||||  ||||||    
T  20387033 atcacggatcagctaaactaatgtcttcatc---tggtgcatccagcagtgccctgatctcttcgtagttcctgggacggatcaaatttttcttaatttg 20386937  T
Q  181 ttca 184  Q
    ||||    
T  20386936 ttca 20386933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 16633 - 16807
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  16633 acaacataaaacacgcgattaattaaaacatagcacattatcacagatcatctaaactaacttcttcctcctctggtccctccaacaaagcccggatctc 16732  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgat 216  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||   |||||||||||    
T  16733 ttcgtagttcctggtccggtgcaaacttttcagaatttgttcagcagatctaaccaatgaagcgtccaactcgat 16807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 6e-64; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 5463375 - 5463200
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||||||||||||| || ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5463375 acaacataaaacacgcgattaagtaaaacataacatattgtcacggattatctaaactaacttctttctcctctggtccctccagcagagcccggatctc 5463276  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| || |||||||||||   ||||||||||||    
T  5463275 ttcgtagttcctggtctggtgcaaacttttcagaatttgttcagcagatttaaccaacgaagcgtccaactcgatc 5463200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 15112339 - 15112164
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| ||||||||| |||||||||||  ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||    
T  15112339 acaacataaaacacgcgattaattaaaacataacacattatcacatatcatctaaactaacttcttccttctctggtccctcaagcagagtccggatctc 15112240  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  15112239 ttcgtagttcctggtctggtgcaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 15112164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 5937329 - 5937154
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || || ||| ||||||||||    
T  5937329 acaacataaaacacgcgattaattaaaacatagcacattatcatggatcatctaaactaacttcttcctccgctggtccttcaagtagatcccggatctc 5937230  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  5937229 ttcgtagttcctgggccggtgcaaaattttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 5937154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 42 - 217
Target Start/End: Original strand, 34949635 - 34949810
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||| ||||||||| | ||||| ||||||||| |||||||||||| |||||||||||||||||||  |||| ||||||||||||| ||| |||| |||||    
T  34949635 acaatataaaacacgcaattaattaaaacatatcacattatcacgaatcatctaaactaacttctaactccgctggtccctccagtagaacccgtatctc 34949734  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||  ||||||||||||    
T  34949735 ttcgtagttcctgggccggtgcaaacttttcagaatttgttcagcagatctaaccaacgaaacgtccaactcgatc 34949810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 42 - 216
Target Start/End: Original strand, 18964472 - 18964643
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    |||||||||||||| ||||||| |||||||||||||||||| | |||||||||||||||||||||||||   ||||||||||||| ||||||| ||||||    
T  18964472 acaacataaaacacgcgattaattaaaacatagcacattataatggatcatctaaactaacttcttcct---ctggtccctccagtagagccctgatctc 18964568  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgat 216  Q
    |||||||||||||| ||||  |||||||||   ||||||||||||| ||||||||||| ||  ||||||||||||    
T  18964569 ttcgtagttcctggaccggatcaaactttttcgaatttgttcagcatatctaaccaacaaagcatccaactcgat 18964643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 37126840 - 37126759
Alignment:
Q  136 gatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||||||||||| |||   ||||||||||  |||||||||| || || | |||||||||   ||||||||||||    
T  37126840 gatctcttcgtagttcctggaccgaatcaaacttttctgaatttgttcaacagatgtgaccaacgaagcgtccaactcgatc 37126759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 42 - 217
Target Start/End: Complemental strand, 24854890 - 24854715
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctc 141  Q
    ||||||||| ||||  |||||| |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||| |||||||||| | |||||    
T  24854890 acaacataatacacgtgattaattaaaacatagcacattatcagggatcatctaaattaacttcgtcctcctctggtcccttcagcagagcctgaatctc 24854791  T
Q  142 ttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||| ||||| || |||||||||| ||||||||||||| ||||||||||||||   ||||||||||||    
T  24854790 ttcgtagttcctagtccgatgtaaacttttcagaatttgttcagcagatctaaccaacgaagcgtccaactcgatc 24854715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 217
Target Start/End: Complemental strand, 31471137 - 31470988
Alignment:
Q  65 taaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccggtgca 164  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||   ||||||||||| |||| ||| ||||||||||||||||||||  |||||||    
T  31471137 taaaatatagaacattatcacggatcatctaaactaacttcttcatc---tggtccctccaacagaaccctgatctcttcgtagttcctgggtcggtgca 31471041  T
Q  165 aacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||||||| ||||||||||||| |||||| |||||||   ||||||||||||    
T  31471040 aacttttcagaatttgttcagcagatctaaacaacgaagcgtccaactcgatc 31470988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 42 - 124
Target Start/End: Complemental strand, 6431442 - 6431360
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctcc 124  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6431442 acaacataaaacacgcgattaagtaaaacatagcacattatcacggatcatttaaactaacttcttcctcctctggtccctcc 6431360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 27949684 - 27949830
Alignment:
Q  68 aacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagttcctggtccggtgcaaac 167  Q
    ||||||||||||||||| |||||| ||||||||||||||||||   ||||||||||||||||||||| |||||||||||||||| |||  |||  |||||    
T  27949684 aacatagcacattatcatggatcacctaaactaacttcttcct---ctggtccctccagcagagccctgatctcttcgtagttcttgggtcggatcaaac 27949780  T
Q  168 ttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    ||||   ||||| |||| || ||||||| ||| ||   ||||||||||||    
T  27949781 ttttttgaattttttcaacagatctaactaactaagcgtccaactcgatc 27949830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 5342829 - 5342771
Alignment:
Q  42 acaacataaaacacacgattaagtaaaacatagcacattatcacggatcatctaaacta 100  Q
    |||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||    
T  5342829 acaacataaaacacgcgattaagtaaaaaatagcacattatcatggatcatctaaacta 5342771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 217
Target Start/End: Complemental strand, 41615346 - 41615182
Alignment:
Q  50 aaacacacgattaagtaaaacatagcacattatcacggatcatctaaactaacttcttcctcctctggtccctccagcagagcccggatctcttcgtagt 149  Q
    |||||| ||||||| |||| ||| | ||||||||||  |||||||||||||| |||||| ||   ||||   || || || |||| |||||||||||||     
T  41615346 aaacacgcgattaattaaaccattgtacattatcacatatcatctaaactaatttcttcatctggtggt---tcaaggagtgccctgatctcttcgtagg 41615250  T
Q  150 tcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||| | ||||| |||||| | || ||||||||||||||||||||||||| ||   ||||||||||||    
T  41615249 tcctaggccggttcaaactatccagaatttgttcagcaaatctaaccaacaaagcgtccaactcgatc 41615182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Original strand, 28335602 - 28335688
Alignment:
Q  131 gcccggatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||| |||||||||||||||  ||| ||||  |||||||| |  |||||||||| ||||||| |||||||||| |||||||||||||    
T  28335602 gccctgatctcttcgtagtttttgggccggatcaaactttcctgaatttgttcaacaaatctgaccaacgaaacatccaactcgatc 28335688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 27689227 - 27689172
Alignment:
Q  136 gatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatc 191  Q
    |||||||||||||||||||| ||||  ||||||||||  |||||||||| ||||||    
T  27689227 gatctcttcgtagttcctgggccggatcaaacttttctgaatttgttcaacaaatc 27689172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 10133844 - 10133744
Alignment:
Q  122 tccagcagagcccggatctcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatcaatc 221  Q
    |||||||| |||  |||||||||||||||||||| ||||  |||||||||    ||||||||| || |||| |||||| ||   |||||||||||| |||    
T  10133844 tccagcagtgccatgatctcttcgtagttcctgggccggatcaaacttttatggatttgttcaacagatcttaccaacaaagtgtccaactcgatcgatc 10133745  T
Q  222 c 222  Q
    |    
T  10133744 c 10133744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 217
Target Start/End: Complemental strand, 426184 - 426107
Alignment:
Q  140 tcttcgtagttcctggtccggtgcaaacttttcaaaatttgttcagcaaatctaaccaacgaaaaatccaactcgatc 217  Q
    |||||||||||| ||| ||||  ||||||||    ||| |||||| ||||||| ||||||||| ||||||||||||||    
T  426184 tcttcgtagttcttgggccggatcaaactttgttgaatatgttcaacaaatctgaccaacgaagaatccaactcgatc 426107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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