View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_423 (Length: 232)

Name: NF7829A_low_423
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_423
NF7829A_low_423
[»] chr1 (6 HSPs)
chr1 (24-232)||(36526186-36526394)
chr1 (57-232)||(37923557-37923732)
chr1 (27-208)||(37872076-37872260)
chr1 (67-183)||(35051609-35051725)
chr1 (86-204)||(8237318-8237434)
chr1 (145-181)||(19023346-19023382)
[»] chr5 (5 HSPs)
chr5 (24-219)||(23270042-23270237)
chr5 (24-177)||(4431011-4431164)
chr5 (97-210)||(14964961-14965074)
chr5 (24-231)||(26917359-26917566)
chr5 (179-232)||(4430764-4430817)
[»] chr8 (1 HSPs)
chr8 (33-232)||(29468266-29468465)
[»] chr7 (3 HSPs)
chr7 (66-183)||(5460931-5461048)
chr7 (105-200)||(28283936-28284031)
chr7 (29-191)||(29443757-29443918)
[»] chr2 (7 HSPs)
chr2 (39-206)||(9252436-9252603)
chr2 (102-208)||(37490893-37490999)
chr2 (67-208)||(19920791-19920932)
chr2 (142-232)||(13018965-13019055)
chr2 (29-183)||(8295127-8295281)
chr2 (145-183)||(13923026-13923064)
chr2 (68-181)||(36359621-36359734)
[»] chr4 (5 HSPs)
chr4 (66-207)||(43000413-43000554)
chr4 (69-160)||(43381919-43382010)
chr4 (138-177)||(29135150-29135189)
chr4 (139-199)||(35762788-35762849)
chr4 (67-179)||(39079649-39079761)
[»] scaffold0305 (1 HSPs)
scaffold0305 (80-208)||(18603-18731)
[»] chr3 (7 HSPs)
chr3 (98-183)||(9738634-9738720)
chr3 (39-175)||(46107349-46107485)
chr3 (127-182)||(21330778-21330833)
chr3 (140-184)||(43059104-43059148)
chr3 (99-182)||(35529008-35529090)
chr3 (141-183)||(47798396-47798438)
chr3 (96-185)||(46016235-46016324)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 36526186 - 36526394
Alignment:
Q  24 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 123  Q
    |||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     
T  36526186 gacagaaacaaatttaactcatttcatttctaatggtagttgtaatacaagatgacatataatcatgaactcgggaactagcataagataatgacgcccg 36526285  T
Q  124 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg 223  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526286 agctaacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcg 36526385  T
Q  224 ccaaacatg 232  Q
    |||||||||    
T  36526386 ccaaacatg 36526394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 57 - 232
Target Start/End: Original strand, 37923557 - 37923732
Alignment:
Q  57 tagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtct 156  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  37923557 tagtagttttaatacaagatggcatataatcatgatcttgggaactagcataagataatgacgccctaactaacaagtgggcaacattatttgtttgtct 37923656  T
Q  157 cctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatg 232  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| ||||| ||||||    
T  37923657 cctaatgaaacttatcttaaagttttgatgattcataagtgaaactttgcaagtattcagaattgcgccgaacatg 37923732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 37872260 - 37872076
Alignment:
Q  27 agaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcat---gaactcgggaactagcataagataatgacgccct 123  Q
    ||||||| ||| |||||||||||||  ||| |   || |||||||||||||||||||||||||   |||||  ||||||| |||||||||| |   | ||    
T  37872260 agaaacatactcaactcatttcattaataacaacggtcgtaatacaagatggcatataatcatcatgaactttggaactaccataagataacgcaactct 37872161  T
Q  124 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaa 208  Q
       ||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||| |||||||    
T  37872160 gactaataagtgggaaacattatttgtttgtctcctaataaaacttatcttaaagttttgattattcagaagtgaagctttgcaa 37872076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 183
Target Start/End: Original strand, 35051609 - 35051725
Alignment:
Q  67 aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa 166  Q
    |||||||||||| |||| |||| |||   |||||||||||||| ||||||||| | | | |||||| ||| ||| |||||||  |||||| |||||||||    
T  35051609 aatacaagatggaatattatcaagaatgtgggaactagcataaaataatgacgtcattgctaacaaatggccaatattattttcttgtcttctaatgaaa 35051708  T
Q  167 cttatcttaaagttttg 183  Q
    ||| |||||||||||||    
T  35051709 cttttcttaaagttttg 35051725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 8237434 - 8237318
Alignment:
Q  86 tcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 185  Q
    ||||||||  |||||| | ||||||||| || || ||||| |||||||| ||||| |||||||| |||||  |||||||||||||||||||| ||||| |    
T  8237434 tcatgaacatgggaaccaacataagatattgtcgtcctagctaacaagtcggcaatattatttgcttgtc--ctaatgaaacttatcttaaaattttggt 8237337  T
Q  186 gattcataagtgaagtttt 204  Q
     | |  |||||||||||||    
T  8237336 aaattctaagtgaagtttt 8237318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 19023346 - 19023382
Alignment:
Q  145 atttgtttgtctcctaatgaaacttatcttaaagttt 181  Q
    |||||||||||||||||  ||||||||||||||||||    
T  19023346 atttgtttgtctcctaacaaaacttatcttaaagttt 19023382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 132; Significance: 1e-68; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 24 - 219
Target Start/End: Complemental strand, 23270237 - 23270042
Alignment:
Q  24 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 123  Q
    |||||||||||| |||| |||||||| |  |||||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  23270237 gacagaaacaaagttaattcatttcactattaatagcatttgtaatacaagatggcatataatcatgaacttgggaactagcataagataatgactccct 23270138  T
Q  124 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaat 219  Q
    || ||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||    
T  23270137 agctaacaagtgagcaacattatttgcttgtcttctaatgaaacttatcttaaagttttgatgattcataagtgaagctttgcaagtgttcagaat 23270042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 24 - 177
Target Start/End: Complemental strand, 4431164 - 4431011
Alignment:
Q  24 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 123  Q
    |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||  || |||||| | | ||| ||||||||||||||  ||||||    
T  4431164 gacagaaacaaacttaactcatttcaattctaataataattgtaatacaagatggcatgcaaccatgaatttgagaattagcataagataattccgccct 4431065  T
Q  124 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaa 177  Q
    || ||||||||||| ||||||||||| || ||||||||| ||||||||||||||    
T  4431064 agctaacaagtgggaaacattatttgcttctctcctaataaaacttatcttaaa 4431011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 97 - 210
Target Start/End: Complemental strand, 14965074 - 14964961
Alignment:
Q  97 ggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagt 196  Q
    |||||||| ||||||||||| |||||||  ||| ||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||| |    
T  14965074 ggaactagtataagataatggcgccctaactaataagtgggcaacattatttgattgtctcttgatgaaacttatcttaaagttttgatgattcataaat 14964975  T
Q  197 gaagttttgcaagt 210  Q
     || ||||||||||    
T  14964974 taaattttgcaagt 14964961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 24 - 231
Target Start/End: Complemental strand, 26917566 - 26917359
Alignment:
Q  24 gacagaaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccct 123  Q
    |||| |||||||||||||||||||||||  |||||  |||   ||| ||||||||||||| |||||||||  ||| || |||||||||||||||||||||    
T  26917566 gacaaaaacaaacttaactcatttcattaataataacagtctcaatgcaagatggcatatgatcatgaacatggggacaagcataagataatgacgccct 26917467  T
Q  124 agataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaag-ttttgatgattcataagtgaagttttgcaagtattgagaatcgc 222  Q
     | ||  |  ||||||||| |||||| |||||||||||| ||||||||||||||| |||||  ||||| ||||||||| ||||||| |||  ||||| ||    
T  26917466 tgctagtagatgggcaacactatttgcttgtctcctaataaaacttatcttaaagtttttgtagattc-taagtgaagctttgcaaatatcaagaatagc 26917368  T
Q  223 gccaaacat 231  Q
    | |||||||    
T  26917367 gtcaaacat 26917359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 179 - 232
Target Start/End: Complemental strand, 4430817 - 4430764
Alignment:
Q  179 ttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatg 232  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||||||    
T  4430817 ttttgatgattcacaagtgaagttttgcaagtattcataatcgcgccaaacatg 4430764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 33 - 232
Target Start/End: Original strand, 29468266 - 29468465
Alignment:
Q  33 aaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaa 132  Q
    ||||| |||||||||||||  |||||||||||||||||||||||| ||| |||||||||||| | |||||||||||| ||||||||  ||||| ||||||    
T  29468266 aaactcaactcatttcattaataatagtagttgtaatacaagatgacatgtaatcatgaacttgagaactagcataacataatgacatcctagctaacaa 29468365  T
Q  133 gtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatg 232  Q
    ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||| || || ||||| ||||||    
T  29468366 gtatgcaacattatttgtttgtctcataatgaaacttatcttaaagttttgatgattcataagtgaagctttgcaaatattcaggattgcgccgaacatg 29468465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 66 - 183
Target Start/End: Complemental strand, 5461048 - 5460931
Alignment:
Q  66 taatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaa 165  Q
    |||||||||||||||||| |||||||| | | | |||||||||||||||||| |  |||| ||||||||  |||||| |||||| |||||||||||||||    
T  5461048 taatacaagatggcatatgatcatgaatttgaggactagcataagataatgatgttctagctaacaagtcagcaacaatatttgcttgtctcctaatgaa 5460949  T
Q  166 acttatcttaaagttttg 183  Q
    ||||||||||||||||||    
T  5460948 acttatcttaaagttttg 5460931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 28284031 - 28283936
Alignment:
Q  105 cataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaag 200  Q
    |||||||||||||| ||||   |||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28284031 cataagataatgacaccctgactaacaagtgaacatcattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcagaagtgaag 28283936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 29 - 191
Target Start/End: Complemental strand, 29443918 - 29443757
Alignment:
Q  29 aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagata 128  Q
    ||||||||| |||||||||||||  ||| |||| | ||||||||| ||| |||||||||||||||  | |||| | ||||||||||| | ||||| | ||    
T  29443918 aaacaaactcaactcatttcattaataacagtaatcgtaatacaatatgacatataatcatgaacatgagaacaaacataagataataatgcccttgcta 29443819  T
Q  129 acaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttgatgattca 191  Q
    |||||||  |||  ||||||| ||||||   |||| ||||||||||||||||||||||||||||    
T  29443818 acaagtgaacaaatttatttgcttgtct--aaatgaaaacttatcttaaagttttgatgattca 29443757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 9252603 - 9252436
Alignment:
Q  39 aactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggc 138  Q
    |||||||||||| | ||| |  ||| |||||| |||||| ||||||||||| |||  | ||||||| |||||||||| ||| ||  | |||||| ||||     
T  9252603 aactcatttcatatataacaacagtcgtaatataagatgacatataatcattaacatgagaactaggataagataataacgtccaggctaacaaatgggt 9252504  T
Q  139 aacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgc 206  Q
    ||||||||| ||||||||  ||||||||||||| ||||||||||||||||||| |||||||| |||||    
T  9252503 aacattattcgtttgtcttttaatgaaacttatgttaaagttttgatgattcaaaagtgaagctttgc 9252436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 102 - 208
Target Start/End: Complemental strand, 37490999 - 37490893
Alignment:
Q  102 tagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagt 201  Q
    |||||| ||||||||||| ||||| |||||||||| |||||||||||  |||||| |||||||||||||||| |||||||||||||||||  |||||||     
T  37490999 tagcatgagataatgacgtcctagctaacaagtggacaacattatttacttgtcttctaatgaaacttatctgaaagttttgatgattcagtagtgaagc 37490900  T
Q  202 tttgcaa 208  Q
    |||||||    
T  37490899 tttgcaa 37490893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 208
Target Start/End: Complemental strand, 19920932 - 19920791
Alignment:
Q  67 aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa 166  Q
    ||||||||||||||||||||||||||   ||||||| | |||||||||||||| ||| | |||||| |||  |||| |||||| |||| |||||||||||    
T  19920932 aatacaagatggcatataatcatgaatgtgggaactggtataagataatgacgtccttgctaacaaatggcaaacactatttgcttgtttcctaatgaaa 19920833  T
Q  167 cttatcttaaagttttgat-gattcataagtgaagttttgcaa 208  Q
    | || |||||||||||||| ||||| ||||||| |||||||||    
T  19920832 cctagcttaaagttttgatagattc-taagtgatgttttgcaa 19920791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 232
Target Start/End: Original strand, 13018965 - 13019055
Alignment:
Q  142 attatttgtttgtctcctaatgaaacttatcttaaagttttgatgattcataagtgaagttttgcaagtattgagaatcgcgccaaacatg 232  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||||| | |||||| |||  ||  ||| ||||| ||||||||||||    
T  13018965 attatttgattgtctcctaatgaaacttatcttaaaattttgatgattcagatgtgaagctttataaccattaagaatagcgccaaacatg 13019055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 8295281 - 8295127
Alignment:
Q  29 aaacaaacttaactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagata 128  Q
    |||||||||||||||||||||||  |||||| | |   |||||||||||| ||||  ||||||||   |  | || ||||||||||||||    | | ||    
T  8295281 aaacaaacttaactcatttcattattaatagcaatctcaatacaagatggtatatgttcatgaacgtagagattaacataagataatgacaaatttgtta 8295182  T
Q  129 acaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttg 183  Q
     ||| || |||||| ||||| |||||||| |||| ||||||||||||||||||||    
T  8295181 gcaaatgagcaacactatttatttgtctcttaataaaacttatcttaaagttttg 8295127  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 183
Target Start/End: Complemental strand, 13923064 - 13923026
Alignment:
Q  145 atttgtttgtctcctaatgaaacttatcttaaagttttg 183  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  13923064 atttgcttgtttcctaatgaaacttatcttaaagttttg 13923026  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 181
Target Start/End: Complemental strand, 36359734 - 36359621
Alignment:
Q  68 atacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaac 167  Q
    |||||||||||||||| |||||||  | | || |||||||| || ||||| ||||| | |||||| |  || ||||| |||| |||||  || || ||||    
T  36359734 atacaagatggcatatgatcatgacattgagacctagcatatgacaatgaagcccttgctaacaaattagccacattgtttgcttgtcgtctgataaaac 36359635  T
Q  168 ttatcttaaagttt 181  Q
    ||||||||||||||    
T  36359634 ttatcttaaagttt 36359621  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 43000413 - 43000554
Alignment:
Q  66 taatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaa 165  Q
    |||| ||||||| |||||||||||||||| || || ||||||||||||||||| || |||  ||||| || | || ||| |||| |||||||||||| ||    
T  43000413 taatgcaagatgacatataatcatgaacttggaaattagcataagataatgacaccttagcaaacaaatgagtaatattgtttgcttgtctcctaataaa 43000512  T
Q  166 acttatcttaaagttttgatgattcataagtgaagttttgca 207  Q
    |||||| |||||||||||||  ||  ||||||||| ||||||    
T  43000513 acttatattaaagttttgattttttttaagtgaagctttgca 43000554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 43382010 - 43381919
Alignment:
Q  69 tacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctccta 160  Q
    |||||||| | |||| ||||||||   || ||||||||||||||||||||| ||| | |||||| || |||||| |||||||||||||||||    
T  43382010 tacaagatagaatatgatcatgaatgtggaaactagcataagataatgacgtccttgttaacaaatgagcaacactatttgtttgtctccta 43381919  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 177
Target Start/End: Complemental strand, 29135189 - 29135150
Alignment:
Q  138 caacattatttgtttgtctcctaatgaaacttatcttaaa 177  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  29135189 caacattatttatttgtctcctaacgaaacttatcttaaa 29135150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 35762849 - 35762788
Alignment:
Q  139 aacattatttgtttgtctcctaatgaaactta-tcttaaagttttgatgattcataagtgaa 199  Q
    ||||||||||||||||| | |||| ||| ||| | ||||||||||||||||||| |||||||    
T  35762849 aacattatttgtttgtcccataataaaatttaatattaaagttttgatgattcacaagtgaa 35762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 179
Target Start/End: Complemental strand, 39079761 - 39079649
Alignment:
Q  67 aatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaa 166  Q
    |||||||||| | |||| |||||||| | |  ||||||||||||||||||||   |||| |||||| ||  | ||||||||| ||| ||   |||| |||    
T  39079761 aatacaagatagtatatgatcatgaatttgaaaactagcataagataatgactttctagctaacaaatgaacgacattatttatttttcgtgtaataaaa 39079662  T
Q  167 cttatcttaaagt 179  Q
    |||||||||||||    
T  39079661 cttatcttaaagt 39079649  T

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Target: scaffold0305 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 18603 - 18731
Alignment:
Q  80 atataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagt 179  Q
    |||||||||||||||  ||| ||||||| || |||||||  | | | |||||||||||||| ||||||| ||| | || ||||||||||| |||| || |    
T  18603 atataatcatgaactttggagctagcatgaggtaatgacaacttggctaacaagtgggcaaaattatttctttttttcttaatgaaacttgtcttcaaat 18702  T
Q  180 tttgatgattcataagtgaagttttgcaa 208  Q
    |||||||||||| |||||||| |||||||    
T  18703 tttgatgattcagaagtgaagctttgcaa 18731  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 9738634 - 9738720
Alignment:
Q  98 gaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatg-aaacttatcttaaagttttg 183  Q
    |||||| |||||||||||||||| |||| |||||| || ||||||||||||| ||||| ||||||| |||  |||||||||||||||    
T  9738634 gaactaacataagataatgacgctctagctaacaaatgagcaacattatttggttgtcacctaatgaaaaaatatcttaaagttttg 9738720  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 175
Target Start/End: Complemental strand, 46107485 - 46107349
Alignment:
Q  39 aactcatttcatttctaatagtagttgtaatacaagatggcatataatcatgaactcgggaactagcataagataatgacgccctagataacaagtgggc 138  Q
    |||||||||||||  |||||   || || ||||||| |||||||| ||  |||| |  ||||||| ||||| |||||||||| |||| |||||| || ||    
T  46107485 aactcatttcattagtaataactgtcgtgatacaagttggcatatgattgtgaatttaggaactaacataatataatgacgctctagctaacaaatgagc 46107386  T
Q  139 aacattatttgtttgtctcctaatgaaacttatctta 175  Q
    ||||||||||  ||||| ||||||||||| |||||||    
T  46107385 aacattatttacttgtcacctaatgaaacgtatctta 46107349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 21330778 - 21330833
Alignment:
Q  127 taacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 182  Q
    |||||| || |||||||||||| ||||||||| ||| |||||||||||||||||||    
T  21330778 taacaaatgagcaacattatttatttgtctccgaataaaacttatcttaaagtttt 21330833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 43059148 - 43059104
Alignment:
Q  140 acattatttgtttgtctcctaatgaaacttatcttaaagttttga 184  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||    
T  43059148 acattatttgtttgtcttataatgaaacttatcttaaaattttga 43059104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 35529008 - 35529090
Alignment:
Q  99 aactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagtttt 182  Q
    ||||| ||||||||||||||   |||| |||||| || ||||||| ||||||||||| | ||||||||||||| ||||| ||||    
T  35529008 aactaacataagataatgacattctagctaacaa-tgagcaacatcatttgtttgtcgcttaatgaaacttattttaaaatttt 35529090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 47798396 - 47798438
Alignment:
Q  141 cattatttgtttgtctcctaatgaaacttatcttaaagttttg 183  Q
    |||||||| |||||||| |||| ||||||||||||||||||||    
T  47798396 cattatttatttgtctcttaataaaacttatcttaaagttttg 47798438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 46016235 - 46016324
Alignment:
Q  96 gggaactagcataagataatgacgccctagataacaagtgggcaacattatttgtttgtctcctaatgaaacttatcttaaagttttgat 185  Q
    |||||| | ||||||||||||| || |||  |||||| || |||||||| |||| |||||  | |||||||||||| ||| |||||||||    
T  46016235 gggaacaaacataagataatgatgctctaactaacaaatgagcaacattgtttgattgtcctcaaatgaaacttatattatagttttgat 46016324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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