View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_428 (Length: 231)
Name: NF7829A_low_428
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_428 |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 33223997 - 33223779
Alignment:
| Q |
1 |
tcaatctcttaaagttccatttccatgcaccaaagtttattacatttgttatagacagagctaaaaacaaaaatcttctccttacaattgatcttcttaa |
100 |
Q |
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| T |
33223997 |
tcaatctcttaaagttccatttccatgcaccaaagtttatgacatttgttatagacagagctaaaaacaaaaatcttctccttacaattgatcttcttaa |
33223898 |
T |
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| Q |
101 |
tcaaattgaaatcagggactctggaagatcttacggaacaaggtttgacaatgagactaagaatcattggggaggggttacaaaaacgaacgttatatac |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33223897 |
tcaaattgaaatcaaggactctggaagatcttacggaacaaggtttgtcaatgagactaagaatcattggggaggggttacaaaaacgaacgttatatac |
33223798 |
T |
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| Q |
201 |
tttgggaatgaaaatgaag |
219 |
Q |
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|||||||||||||||||| |
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| T |
33223797 |
cttgggaatgaaaatgaag |
33223779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 92 - 231
Target Start/End: Complemental strand, 33226872 - 33226733
Alignment:
| Q |
92 |
tcttcttaatcaaattgaaatcagggactctggaagatcttacggaacaaggtttgacaatgagactaagaatcattggggaggggttacaaaaacgaac |
191 |
Q |
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||||||| ||| ||||||||| | ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33226872 |
tcttcttgatccaattgaaattaaggactctggaaaatcttacggaacaaggtttgttaatgagactaagaatcattggggaggggttacaaaaacgaat |
33226773 |
T |
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| Q |
192 |
gttatatactttgggaatgaaaatgaagggaaccttattg |
231 |
Q |
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||||||||||||||| ||||| |||| ||||||||||||| |
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| T |
33226772 |
gttatatactttggggatgaatatgatgggaaccttattg |
33226733 |
T |
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