View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_431 (Length: 230)
Name: NF7829A_low_431
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_431 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 6318121 - 6317898
Alignment:
| Q |
1 |
aacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgtt |
100 |
Q |
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| T |
6318121 |
aacttttatagcctcttggcattcaaacaagatatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgaacccctcttgtt |
6318022 |
T |
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| Q |
101 |
atgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatcatatg |
200 |
Q |
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| T |
6318021 |
atgagtttttctctcgtctgcgatcaaccttttttggtactcttaacctccataactttgtccactcccctggttttctcaagtttacataaatcatatg |
6317922 |
T |
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| Q |
201 |
accatatttcactgatcaagtttc |
224 |
Q |
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| T |
6317921 |
accatatttcactgatcaagtttc |
6317898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 55983990 - 55983907
Alignment:
| Q |
32 |
atatgtcaatcactttcattttccccttcacaaaaaggacaagaagtttgacattgtacccctcttgttatgagtttttctctc |
115 |
Q |
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| T |
55983990 |
atatgtcaatcactttcattttcctcttctctaaaaggacatgaaatttgacattgaacccctcgtcttatgagtttttctctc |
55983907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 167
Target Start/End: Complemental strand, 55983861 - 55983824
Alignment:
| Q |
130 |
ttttttggtactcttaacctccataactttgtccactc |
167 |
Q |
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| T |
55983861 |
ttttttggtactcttaacctccacaactttgtccactc |
55983824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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