View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_434 (Length: 230)
Name: NF7829A_low_434
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_434 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1075 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 17006328 - 17006558
Alignment:
| Q |
1 |
agaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgac-tttggtgcaatgaaaatggaaaaatttctccgacaatttttacttta |
99 |
Q |
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| T |
17006328 |
agaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccgacaatttttactttg |
17006427 |
T |
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| Q |
100 |
actggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttggaagctc |
199 |
Q |
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| T |
17006428 |
actggtaaatgtaagagggaatttttaacaattttaaagaatatcacagtgccggatggttattcaagcaacatttctagatgcattgacttggaagctc |
17006527 |
T |
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| Q |
200 |
ttaagttgaaaggaacattgaagagtcatga |
230 |
Q |
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| T |
17006528 |
ttaagttgaaaggaatgttgaagagtcatga |
17006558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1075 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold1075
Description:
Target: scaffold1075; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 2769 - 2539
Alignment:
| Q |
1 |
agaccatgttgatgctcgaagagaccttgaagttatgggcataagatctgac-tttggtgcaatgaaaatggaaaaatttctccgacaatttttacttta |
99 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2769 |
agaccatgttgatgctcgtagagaccttgaagttatgggcataagatctgacctttggtgcaatgaaaatggaaaaatttctccggcaatttttactttg |
2670 |
T |
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| Q |
100 |
actggtaaaagtaagagggaatttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttggaagctc |
199 |
Q |
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| T |
2669 |
actggtaaaagtaagagggattttttaacaattttaaagaatatcacagtgcctgatggttattcaagcaacatttctagatgcattgacttagaagctc |
2570 |
T |
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| Q |
200 |
ttaagttgaaaggaacattgaagagtcatga |
230 |
Q |
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| T |
2569 |
ttaagttgaaaggaacgttgaagagtcatga |
2539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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