View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_435 (Length: 230)
Name: NF7829A_low_435
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_435 |
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Alignment Details
Target: chr6 (Bit Score: 177; Significance: 1e-95; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 8700251 - 8700455
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
8700251 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacatccccagaacttttttccacaatttggattctgactatcagt |
8700350 |
T |
|
| Q |
117 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttctcatattcgaaccgacggaaccagaagactgactcatattcttc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||| | |||| |
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|
| T |
8700351 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattactctctttctcagattcgaaccgacggaaccagaacactgactcatttgcttc |
8700450 |
T |
|
| Q |
217 |
gacat |
221 |
Q |
| |
|
||||| |
|
|
| T |
8700451 |
gacat |
8700455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 152
Target Start/End: Original strand, 11388312 - 11388400
Alignment:
| Q |
64 |
tagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctgca |
152 |
Q |
| |
|
||||||||||| ||| | || || || ||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |
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|
| T |
11388312 |
tagtttctacagccccaaaatttcttcccacaatttggattcaatgaatcagttacagttcgaacaacaacattttcaccacacctgca |
11388400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 21774562 - 21774510
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagttt |
69 |
Q |
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|
|||||||||||||||| |||||||| || ||||| | ||||||||||||||| |
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|
| T |
21774562 |
catcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagttt |
21774510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 17 - 221
Target Start/End: Original strand, 20598962 - 20599166
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
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|
| T |
20598962 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccccataacttttttccacaatttggattctgactatcagt |
20599061 |
T |
|
| Q |
117 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttctcatattcgaaccgacggaaccagaagactgactcatattcttc |
216 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| | |||| |
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|
| T |
20599062 |
aacagttcgaacaacaatatcttcaccacacctgcattcaaaaattgctctctttctcagattcgaaccgacggaaccagcagactgactcatttgcttc |
20599161 |
T |
|
| Q |
217 |
gacat |
221 |
Q |
| |
|
||||| |
|
|
| T |
20599162 |
gacat |
20599166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 25559936 - 25559770
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagt |
116 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| || ||||||||||||||||| |||||| |||||||||||||||| |||||||| | |||| || |
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|
| T |
25559936 |
catcaactaacttgaagaaactacaacccttgtcatattgatttttgtagtttctgcaacccaagaacttttttccacagtttggattgtaggtatctgt |
25559837 |
T |
|
| Q |
117 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttctcatattcgaacc |
185 |
Q |
| |
|
|||||||| |||||| || ||||| |||||||||||||| |||||| |||||||||| ||||||||| |
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|
| T |
25559836 |
aacagttctaacaactgtttcttctccacacctgcattccgaaattg--ctctttctcaaattcgaacc |
25559770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 40557561 - 40557393
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagt |
116 |
Q |
| |
|
|||||||||||||||| ||| |||| || ||||| || ||||||||||||||| | |||||| |||||||||||||||| |||||||| | |||| || |
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|
| T |
40557561 |
catcaactaacttgaagaaaatacaacccttgtcatattgatttttgtagtttttgcaacccaagaacttttttccacagtttggattgtaggtatctgt |
40557462 |
T |
|
| Q |
117 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttctcatattcgaacc |
185 |
Q |
| |
|
|||||||| ||||| || ||||| |||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
40557461 |
aacagttctaacaattgtttcttctccacacctgcattccgtaattgctctctttctcaaattcgaacc |
40557393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 23333481 - 23333637
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagt |
116 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| | ||||||||||||||||| |||||| |||||||||| ||||| ||||| || | ||||| || |
|
|
| T |
23333481 |
catcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccagaactttttcccacagtttgggttgtagctatctgt |
23333580 |
T |
|
| Q |
117 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttct |
173 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||||| |||||||||||||| |
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|
| T |
23333581 |
gacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttct |
23333637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 21791022 - 21790934
Alignment:
| Q |
64 |
tagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctgca |
152 |
Q |
| |
|
||||||||||| ||| | || || || ||||||||||||||| |||||| ||||||||||||||| || ||||||||||||||| |
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|
| T |
21791022 |
tagtttctacagccccaaaatttcttcccacaatttggattcaatgaatcagttacagttcgaacaacaacattttcaccacacctgca |
21790934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 185
Target Start/End: Complemental strand, 34894660 - 34894560
Alignment:
| Q |
85 |
ttttttccacaatttggattctgactatcagtaacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttctcatattcgaac |
184 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||| || || |||||||||||||| |||||| | |||||| |||||||| |||||| |
|
|
| T |
34894660 |
tttttcccacaatttggattcgtgttatcagtaacagtacgaatcactgtttcttcaccacacctacattcagtcactgctcttcttctcatactcgaac |
34894561 |
T |
|
| Q |
185 |
c |
185 |
Q |
| |
|
| |
|
|
| T |
34894560 |
c |
34894560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 20625045 - 20625201
Alignment:
| Q |
17 |
catcaactaacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagt |
116 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||| | ||||||||||||||||| |||||| | |||||||| ||||| |||||||| | ||||| || |
|
|
| T |
20625045 |
catcaactaacttgaagaaactacaacccttgtcaaattgatttttgtagtttctgcaaccccaaaactttttcccacagtttggattgtagctatctgt |
20625144 |
T |
|
| Q |
117 |
aacagttcgaacaacagtatcttcaccacacctgcattcaaaaattgctctctttct |
173 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
20625145 |
gacagttcgaacaactgattcttctccacacctgcattccgtgattgctctctttct |
20625201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 35663805 - 35663937
Alignment:
| Q |
24 |
taacttgaaaaaactacagcctttgtcgtactgatttttgtagtttctacaaccctagaacttttttccacaatttggattctgactatcagtaacagtt |
123 |
Q |
| |
|
|||||| ||||||||||| ||||| || | ||||| ||||| ||| | || ||| | || ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
35663805 |
taacttaaaaaaactacaacctttatcaaagtgattcttgtaatttttgcatccccaaaattttttcccacagtttggattcgtgttatcagtaacagta |
35663904 |
T |
|
| Q |
124 |
cgaacaacagtatcttcaccacacctgcattca |
156 |
Q |
| |
|
|||| || || |||||||||||||| |||||| |
|
|
| T |
35663905 |
cgaatcactgtttcttcaccacacctacattca |
35663937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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