View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_436 (Length: 230)
Name: NF7829A_low_436
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_436 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 41 - 225
Target Start/End: Complemental strand, 3009173 - 3008989
Alignment:
| Q |
41 |
tatacctgaaggccaaaattgcttgcattacaatggcgaattccttcttcgacggaatttattctgataacaggcaaaactggtccaaatggttcttccc |
140 |
Q |
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| T |
3009173 |
tatacctgaaggccaaaattgcttgcattacaatggcgaattccttcttcgacggaatttattctgataacaggcaaaactggtccaaatggttcttccc |
3009074 |
T |
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| Q |
141 |
acgatatcctcatatcggaacgaacattatccaacaaaaggggccatatgagatttccttcccttctgtattcttggcaaaatgt |
225 |
Q |
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| T |
3009073 |
acgatatcctcatatcggaacgaacattatccaacaaaagtggccatatgagatttccttcccttctgtattcttggcaaaatgt |
3008989 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 225
Target Start/End: Original strand, 54725172 - 54725354
Alignment:
| Q |
43 |
tacctgaaggccaaaattgcttgcattacaatggcgaattccttcttcgacggaatttattctgataacaggcaaaactggtccaaatggttcttcccac |
142 |
Q |
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||||||||| ||||| || || |||||||||||| | || |||||||| || ||||| || || || ||||||||||||||||||||||| || ||||| |
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| T |
54725172 |
tacctgaagtccaaagttactagcattacaatggtggatgccttcttcaacagaattgatcctaattacaggcaaaactggtccaaatggctcctcccaa |
54725271 |
T |
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| Q |
143 |
gatatcctcatatcggaacgaacattatccaacaaaaggggccatatgagatttccttcccttctgtattcttggcaaaatgt |
225 |
Q |
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| T |
54725272 |
gcaattctcatgtctggcctaacattatccaataacaaaggccaaataagattcccttctctcttgtattcttggcagaatgt |
54725354 |
T |
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