View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_440 (Length: 230)
Name: NF7829A_low_440
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_440 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 28908079 - 28907849
Alignment:
| Q |
1 |
attatttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataagtgtgctggaatttacctttgttatttt |
100 |
Q |
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| T |
28908079 |
attatttgtggatttggacgagttggccaggtaaattctctatattttggtttgcttagttagtttacataaatgtgctggaatttacctttgttatttt |
28907980 |
T |
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| Q |
101 |
cagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaacacaacat-cctaattgaaatttctatccttttc |
199 |
Q |
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| T |
28907979 |
cagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaacacaacatccctaatttaaatttctatccttttc |
28907880 |
T |
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| Q |
200 |
ttgtaattgttcttatggatgaatgatttga |
230 |
Q |
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| T |
28907879 |
ttgtaattgttcttatggatgaatgatttga |
28907849 |
T |
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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 11848293 - 11848370
Alignment:
| Q |
90 |
tttgttattttcagatcattgcacaacttctttccgagcgacttattccatttgttgcactagatgtgagaaggtaac |
167 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||| |
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| T |
11848293 |
tttgttattctcagatcattgcacaacttctttctgagcgacttattccttttgtcgcactagatgtgcgaaggtaac |
11848370 |
T |
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