View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_441 (Length: 230)
Name: NF7829A_low_441
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_441 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 178244 - 178471
Alignment:
| Q |
1 |
aactagaagagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttctaccatcacatttgaaatatgtgttcct |
100 |
Q |
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| T |
178244 |
aactagaagagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttttaccatcacatgtgaaatatgtgttcct |
178343 |
T |
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| Q |
101 |
tgaagatgatggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgata |
200 |
Q |
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| T |
178344 |
tgaagatggtggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgata |
178443 |
T |
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| Q |
201 |
gggtggaaattatccgatttgaaaggga |
228 |
Q |
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| T |
178444 |
gggtggaaattatccgatttgaaaggga |
178471 |
T |
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Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 218
Target Start/End: Original strand, 20171874 - 20172083
Alignment:
| Q |
9 |
gagttgaaagaggactccaaggaagaagccaaagttgatgacaccaaggttgaattgaaagttctaccatcacatttgaaatatgtgttccttgaagatg |
108 |
Q |
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| T |
20171874 |
gagttgaaagatgagtccaaggaagaatccaaagttggtgatgccaaggttgaactaaaagtcttaccatcacacttgaagtacgttttttttgaaaatg |
20171973 |
T |
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| Q |
109 |
atggtaccaaaccggtgatcattagtagctccttgtccgtcactgaagaagcaaagttggtggaaatcctcaagttcaacaaagaagcgatagggtggaa |
208 |
Q |
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| T |
20171974 |
atggtaccaaaccggttaacattagtagctccttgtccgtcaaagaggaaaaaaaattggtcgaagtcctcaagagtaataaagaagcaataggttggaa |
20172073 |
T |
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| Q |
209 |
attatccgat |
218 |
Q |
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| T |
20172074 |
gttgtccgat |
20172083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 17787533 - 17787590
Alignment:
| Q |
78 |
tcacatttgaaatatgtgttccttgaagatgatggtaccaaaccggtgatcattagta |
135 |
Q |
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| T |
17787533 |
tcacatctaaaatatgtatgccttgaagaggatggcacaaaaccggtgatcattagta |
17787590 |
T |
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