View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_442 (Length: 230)
Name: NF7829A_low_442
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_442 |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] scaffold0163 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 16660532 - 16660761
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
16660532 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattacggcgatgcggttccaacatgcttcagcg |
16660631 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattccacagttcagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
16660632 |
gagtcatcaacaacaaggatggattgaagaatatctattgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattccacagatcagaat |
16660731 |
T |
|
| Q |
201 |
cggtagccttaaggtcagtcgatgctttga |
230 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
16660732 |
cggtagccttaaggtcagccgatgctttga |
16660761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 19340427 - 19340627
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
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||||||||| ||||| ||||| || || || ||||| || ||||||| ||||||||||||||||||||| || |||||||| ||||| ||| ||||||| |
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| T |
19340427 |
ttccaggttggtgttgctgaattgattttcgagttgaacagcacgagcatgtttgttgtcattaaacatggctgcgatgcgtttccaacattcttcagca |
19340526 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattccacagttcagaat |
200 |
Q |
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| ||||| || |||||||| || ||| |||||| |||||| || || |||||||| || || | |||||||||||||||||||| || ||||||| |
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| T |
19340527 |
gtgtcattaatcacaaggatagaggtaaggatatcttgtgtgacagtggcatacatccactgtaataacacagcatcaaggcgattccatagatcagaat |
19340626 |
T |
|
| Q |
201 |
c |
201 |
Q |
| |
|
| |
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|
| T |
19340627 |
c |
19340627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 18389621 - 18389565
Alignment:
| Q |
146 |
gttgcgtacatccattgcaacactacagcatcaaggcgattccacagttcagaatcg |
202 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||||| |||||||| || ||||||||| |
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| T |
18389621 |
gttgcatacatccattgcaacacaacagcgtcaagacgattccaaaggtcagaatcg |
18389565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 45178236 - 45178048
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
| |
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||||| ||||||||| ||||||||||| || ||||| || || | |||| ||||||||||| ||| | || || ||||| ||||| || |||||| |
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| T |
45178236 |
ttccaagtttgtgttgctgaactggttttcgagttggacagctctcgaatttttgttgtcatgaaataacgccgcaatgcgtttccaacactgttcagct |
45178137 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattcca |
189 |
Q |
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| ||||| ||| ||||| ||||| | ||||||||| |||||| || || |||||||||||||| | || ||||||||||| ||||| |
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| T |
45178136 |
gtgtcattaaccacaagaatggaattgagaatatcttgtgtgacagtagcatacatccattgcaagtcaaccgcatcaaggcggttcca |
45178048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 33283736 - 33283507
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33283736 |
ttccaggtttgtgttactgaactggttctctagttgcatggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccaccatgcttcagcg |
33283637 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattccacagttcagaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
33283636 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacaacatcaaggcgattccacatatcagaat |
33283537 |
T |
|
| Q |
201 |
cggtagccttaaggtcagtcgatgctttga |
230 |
Q |
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|||||||||||||||||| ||||||||||| |
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| T |
33283536 |
cggtagccttaaggtcagccgatgctttga |
33283507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 34800 - 35029
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
| |
|
||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34800 |
ttccaagtttgtattactgaattggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
34899 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattccacagttcagaat |
200 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
34900 |
gagtcatcaaaaacaaggatggattgaagaatatatgttgtgactgttgtgtacatccattgcaacacaaaagcatcaaggcgattccacagatcagaat |
34999 |
T |
|
| Q |
201 |
cggtagccttaaggtcagtcgatgctttga |
230 |
Q |
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|
|||||||||||||||||| ||||||||||| |
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| T |
35000 |
cggtagccttaaggtcagccgatgctttga |
35029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25039436 - 25039208
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||||| || ||| | ||||||| ||||||||||||||||||| || || ||||||||||| ||| ||| |
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| T |
25039436 |
ttccagatttgtgttactaaactggttatctagttccaaggctcaggaatgttggttgtcattaaacattgcgacggtgtggttccagcattctttggcg |
25039337 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggatggattgaagaatatctgttgtgactgttgcgtacatccattgcaacactacagcatcaaggcgattccacagttcagaat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| | ||||| ||||| ||||||||||||||||||| || ||||||||||||||||||| ||||||| |
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| T |
25039336 |
gagtcatcaacaagaaggatggattgaagaatatatcttgtg-ttgttgggtacatccattgcaacactgcaacatcaaggcgattccacagatcagaat |
25039238 |
T |
|
| Q |
201 |
cggtagccttaaggtcagtcgatgctttga |
230 |
Q |
| |
|
| ||||||||| ||| | |||| |||||| |
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| T |
25039237 |
caatagccttaacgtcggccgatactttga |
25039208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 38617873 - 38617992
Alignment:
| Q |
1 |
ttccaggtttgtgttactgaactggttctctagttgcacggcacgagaatgtttgttgtcattaaacattgcggcgatgcggttccagcatgcttcagcg |
100 |
Q |
| |
|
||||||||| ||||| ||||| || || || ||||| || ||| ||| ||||||||||||||||||||| || ||||| || ||||| ||| ||||||| |
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| T |
38617873 |
ttccaggttggtgttgctgaattgattttcgagttgaacagcatgagcatgtttgttgtcattaaacatggctgcgatacgtttccaacattcttcagca |
38617972 |
T |
|
| Q |
101 |
gagtcatcaacaacaaggat |
120 |
Q |
| |
|
| ||||| || |||||||| |
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|
| T |
38617973 |
gtgtcattaatcacaaggat |
38617992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 8396464 - 8396513
Alignment:
| Q |
181 |
gcgattccacagttcagaatcggtagccttaaggtcagtcgatgctttga |
230 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
8396464 |
gcgattccacatatcagaattggtagccttaaggtcagccgatgctttga |
8396513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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