View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_443 (Length: 230)
Name: NF7829A_low_443
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_443 |
 | |
|
| [»] scaffold0049 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
| [»] scaffold0028 (2 HSPs) |
| | |
|
| [»] scaffold0021 (1 HSPs) |
| | |
|
| [»] scaffold0500 (1 HSPs) |
| | |
|
| [»] scaffold1922 (1 HSPs) |
| | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
| [»] scaffold0773 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18711252 - 18711025
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18711252 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggtctttttgttgaaataaattcttttgg |
18711153 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18711152 |
agaaaaactgcttttgacttgttttcccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
18711053 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
18711052 |
gaaattttggaaatagtatccatactta |
18711025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 15327517 - 15327734
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
15327517 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggtctttttgttgaaataaattctttt-- |
15327614 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15327615 |
--------tgcttttgacttgttttcccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
15327706 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15327707 |
gaaattttggaaatagtatccatactta |
15327734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 725228 - 725455
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || | |||||| || |||||||||||||| ||||||||||| |
|
|
| T |
725228 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtaattcaagaggtctttttgttgaaatgaattcttttgg |
725327 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
725328 |
aggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
725427 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
725428 |
gatattctggaaattgtttccatactta |
725455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 24297340 - 24297516
Alignment:
| Q |
38 |
aggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacat |
137 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || |||||||| |||| || | |||| ||||||||||||||||||||| || | |||| |
|
|
| T |
24297340 |
aggtccaaataagtctatgtgaagaagctcaagaggtctttttgtagaaacaatattatttgatttaaaactgcttttgacttgttttcctctagcacat |
24297439 |
T |
|
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||| |||||||| | ||||||| ||| ||||| ||||| |
|
|
| T |
24297440 |
gcttcacatattttatctttctcaaaattaatttttggaagacctcttaccaagtctagttgtgagatttttgaaat |
24297516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 24415842 - 24415656
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
24415842 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
24415744 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| ||||||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
24415743 |
tcgcatattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatactta |
24415656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 5603751 - 5603627
Alignment:
| Q |
104 |
aaaactgcttttgacttgtttccc-cttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttga |
202 |
Q |
| |
|
|||||| |||||||||||||| || |||| | ||||||||||| || |||||||| ||| | |||| || ||||| ||||| |||||||| |||| || |
|
|
| T |
5603751 |
aaaactacttttgacttgttttcctcttg-tgcatgcttcacagattttatctttttcataacttatttttggaagccctctaactagatcaagttggga |
5603653 |
T |
|
| Q |
203 |
aattttggaaatagtatccatactta |
228 |
Q |
| |
|
|||||| |||||||| | |||||||| |
|
|
| T |
5603652 |
aatttttgaaatagttttcatactta |
5603627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 30451365 - 30451551
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
30451365 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
30451463 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| ||||||| ||||| | || || |||||||||||||| ||||| ||||| | ||||| |||||||| | |||||||| |
|
|
| T |
30451464 |
tcgcatattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggcgatttttgaaatagttttcatactta |
30451551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45495958 - 45496185
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
45495958 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctctttgttgaaataaattcttttgg |
45496057 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45496058 |
agaaaaactgcttttgacttgttttcccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
45496157 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
45496158 |
gaaattttggaaatagtatacatactta |
45496185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 3 - 228
Target Start/End: Complemental strand, 19753959 - 19753735
Alignment:
| Q |
3 |
ccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgggg |
102 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||| || ||||| || ||||||| || ||||||||||||||||| ||||| || | |
|
|
| T |
19753959 |
ccatattttttgccaccaagactttctattgagataggtccaaataaatcaatgtgaagtagttcaaaaggtctttttgttgaaataaaatctttaggag |
19753860 |
T |
|
| Q |
103 |
aaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttga |
202 |
Q |
| |
|
|||| |||||||||||||||| || || ||||| ||||||||||||||| |||||| |||| |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
19753859 |
gaaaattgcttttgacttgttttcctccgacacatgtttcacatatcttatccttctcatagttaatctta-gaagtcctcttactagatcaagttttga |
19753761 |
T |
|
| Q |
203 |
aattttggaaatagtatccatactta |
228 |
Q |
| |
|
||| | ||||| || |||||||||| |
|
|
| T |
19753760 |
tattctagaaattgtttccatactta |
19753735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 18235946 - 18235770
Alignment:
| Q |
38 |
aggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacat |
137 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || |||||||| |||| || | |||| ||||||||||||||||||||| || | |||| |
|
|
| T |
18235946 |
aggtccaaataagtctatgtgaagaagctcaagaggtctttttgtagaaacaatattatttgatttaaaactgcttttgacttgttttcctctagcacat |
18235847 |
T |
|
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||| |||||||| | ||||||| ||| ||||| ||||| |
|
|
| T |
18235846 |
gcttcacatattttatctttctcaaaattaatttttggaagacctcttaccaagtctagttgtgagatttttgaaat |
18235770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 18245397 - 18245221
Alignment:
| Q |
38 |
aggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacat |
137 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || |||||||| |||| || | |||| ||||||||||||||||||||| || | |||| |
|
|
| T |
18245397 |
aggtccaaataagtctatgtgaagaagctcaagaggtctttttgtagaaacaatattatttgatttaaaactgcttttgacttgttttcctctagcacat |
18245298 |
T |
|
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||| |||||||| | ||||||| ||| ||||| ||||| |
|
|
| T |
18245297 |
gcttcacatattttatctttctcaaaattaatttttggaagacctcttaccaagtctagttgtgagatttttgaaat |
18245221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 214
Target Start/End: Original strand, 25048135 - 25048311
Alignment:
| Q |
38 |
aggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacat |
137 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||| || | |||||| ||||| | | |||| |||||||||||| |||||||| || | |||| |
|
|
| T |
25048135 |
aggtccaaataaatctatgtgaagaagctcaagaggtcgttttgtagaaatgatgttatttgttttaaaactgcttttaacttgttttcctctagcacat |
25048234 |
T |
|
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||| |||||||||| ||||||| ||| ||||| ||||| |
|
|
| T |
25048235 |
gcttcacatattttatctttctcaaaattaatttttggaagacctcttactaagtctagttgtgagatttttgaaat |
25048311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 12918737 - 12918654
Alignment:
| Q |
134 |
acatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagt |
217 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || || || ||||| |||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
12918737 |
acatgcttcacatattttatctttatcaaaattaatttttggaagacctcttactaagtctagttgtgaaatttttgaaatagt |
12918654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 14935554 - 14935334
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14935554 |
agccatatctttttccaccaagactttctattgagata-------ataagtctatgtgtagaagttcaaggggcctctttgttgaaataaattcttttgg |
14935462 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14935461 |
agaaaaactgcttttgacttgttttcccttgatacatgcttcacgtattttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
14935362 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
14935361 |
gaaattttggaaatagtatccatactta |
14935334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 115404 - 115177
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || | |||||| || |||||||||||||| ||||||||||| |
|
|
| T |
115404 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtaattcaagaggtctttttgttgaaatgaattcttttgg |
115305 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
115304 |
aggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
115205 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
115204 |
gatattctggaaattgtttccatactta |
115177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 18127798 - 18127882
Alignment:
| Q |
133 |
tacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagt |
217 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || || | |||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
18127798 |
tacatgcttcacatattctatctttttcaaaattaattattggaagtcctcttactagatctagtttggaaattttttaaatagt |
18127882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 26815504 - 26815318
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
26815504 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
26815406 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| || || ||||||| ||||| || || || |||||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
26815405 |
tcgcaaattctatctttttcaaaattaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatactta |
26815318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 54696549 - 54696735
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
54696549 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
54696647 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| ||||||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
54696648 |
tcgcatattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatactta |
54696735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 27747734 - 27747961
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
27747734 |
agccatatttttttccaccaagactttctattgaaataggtccaaataaatctatgtgtagtagttcaaggggtctttttgttgaaatgaactcttttgg |
27747833 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
|||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
27747834 |
agaaaaactacttttgacttgttttcccttgacacatgcttcacatattttatctttttcaaagttgatcttaggaagtcctcttactagatcaagtctt |
27747933 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| |||||||| |||||||||| |
|
|
| T |
27747934 |
gatatttttgaaatagtttccatactta |
27747961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 10 - 208
Target Start/End: Complemental strand, 11377043 - 11376845
Alignment:
| Q |
10 |
tttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaact |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| |||| | |||||| |
|
|
| T |
11377043 |
tttttccaccaagactttctattgagatagatccaaataaatctatgtgtagtagttcaaggggtctttttgttgaaataaaatctgttggaggaaaact |
11376944 |
T |
|
| Q |
110 |
gcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaatttt |
208 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||| | ||| |||| ||||| |
|
|
| T |
11376943 |
acttttgacttgttttcccttgacacatgtttcacatattttatctttttcaaagttgatcttaggaagtcctcttactagaacaagtcttgatatttt |
11376845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 8998102 - 8997875
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || | |||||| || |||||||||||||| ||||||||||| |
|
|
| T |
8998102 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtaattcaagaggtctttttgttgaaatgaattcttttgg |
8998003 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
8998002 |
aggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
8997903 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
8997902 |
gatattctggaaattgtttccatactta |
8997875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9007271 - 9007044
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| || ||| |||||||||| ||||| ||||| |
|
|
| T |
9007271 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtagttcaagaggtcttcttgttgaaatgaattcctttgg |
9007172 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || | | |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
9007171 |
aggaaaactacttttgacttgttttcctctaacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
9007072 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
9007071 |
gatattctggaaattgtttccatactta |
9007044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 25897713 - 25897537
Alignment:
| Q |
38 |
aggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacat |
137 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| || |||||||| |||| || | |||| ||||||||||||||||||||| || | |||| |
|
|
| T |
25897713 |
aggtccaaataagtctatgtgaagaagctcaagaggtctttttgtagaaacaatattatttgatttaaaactgcttttgacttgttttcctctagcacat |
25897614 |
T |
|
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||| |||||||| | ||||||| ||| ||||| ||||| |
|
|
| T |
25897613 |
gcttcacatattttatctttctcaaaattaatttttggaagacctcttaccaagtctagttgtgagatttttgaaat |
25897537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 18244 - 18018
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| |||| |||||| ||||||||||| |||||||||||||| || |||||||| |
|
|
| T |
18244 |
agccatat-tttttccaccaagactttctattgaaataggtccaaataaatctacgtgtagtagttcaaggggtctttttgttgaaatgaactcttttgg |
18146 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| ||| ||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||| || |
|
|
| T |
18145 |
aggaaaactacttttgacttgttttcccatgacacatgcttcacatattttatctttttcaaagttgatcttaggaagtcctcttactagatcaagtctt |
18046 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| ||||| || |||||||||| |
|
|
| T |
18045 |
gatatttttgaaattgtttccatactta |
18018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25508094 - 25508321
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||| ||| |
|
|
| T |
25508094 |
agccatatcttttttcaccaagactttctattgagataggtccaaataaatctatgtgtagtagttcaaggggtctttttgttgaaataaaatcttctgg |
25508193 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
|||||| |||||||||||||| || |||| |||||||||||| || || || |||||||| || |||||||||||||||||||||||||| |||||| |
|
|
| T |
25508194 |
aagaaaactacttttgacttgttttcctttgacacatgcttcacaaattttgtccttctcaaaattgatcttaggaagtcctcttactagatcaagtttt |
25508293 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| ||||| || || ||||||| |
|
|
| T |
25508294 |
gatatttttgaaatggtttcaatactta |
25508321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 19688053 - 19687826
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
19688053 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtagttcaagaggtctttttgttgaaatgaattcttttgg |
19687954 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || |||| ||||||| |||||| ||||| |||||| |||| |||||||||||||||||||||| ||| ||||| |
|
|
| T |
19687953 |
aggaaaactacttttgacttgttttcctttgacgcatgctttacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcatgtttt |
19687854 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
19687853 |
gatattctggaaattgtttccatactta |
19687826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 4363902 - 4363986
Alignment:
| Q |
133 |
tacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagt |
217 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| || || | |||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
4363902 |
tacatgcttcacatattctatctttttcaaaattaattattggaagtcctcttactagatctagtttggaaattttttaaatagt |
4363986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 48981854 - 48981730
Alignment:
| Q |
104 |
aaaactgcttttgacttgtttccc-cttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttga |
202 |
Q |
| |
|
|||||| |||||||||||||| || |||| | ||||||||||| || |||||||| ||| | |||| || ||||| ||||| |||||||| |||| || |
|
|
| T |
48981854 |
aaaactacttttgacttgttttcctcttg-tgcatgcttcacagattttatctttttcataacttatttttggaagccctctaactagatcaagttggga |
48981756 |
T |
|
| Q |
203 |
aattttggaaatagtatccatactta |
228 |
Q |
| |
|
|||||| |||||||| | |||||||| |
|
|
| T |
48981755 |
aatttttgaaatagttttcatactta |
48981730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 28361455 - 28361641
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
28361455 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
28361553 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| || || ||||||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
28361554 |
tcgcaaattctatctttttcaaaatcaatttttggaagtcctcttacgagatccagtttggagatttttgaaatagttttcatactta |
28361641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 52271 - 52044
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || | |||||| || |||||||||||||| ||||||||||| |
|
|
| T |
52271 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtaattcaagaggtctttttgttgaaatgaattcttttgg |
52172 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
52171 |
aggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
52072 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
52071 |
gatattctggaaattgtttccatactta |
52044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 85078 - 84851
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
85078 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtagttcaagaggtctttttgttgaaataaattcttttga |
84979 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| ||||||||||||||| ||||| |||||| |||| |||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
84978 |
aggaaaactacttttgacttgttttcctctgacacatgcttcacatattttatccttctcatagttaatcttaggaagtactcctactaaatcaagtttt |
84879 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
84878 |
gatattctggaaattgtttccatactta |
84851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 228
Target Start/End: Original strand, 101063 - 101249
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
101063 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
101161 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| ||||||| ||||| | || || |||||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
101162 |
tcgcatattctatctttttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatactta |
101249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0021 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: scaffold0021
Description:
Target: scaffold0021; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 228
Target Start/End: Complemental strand, 166524 - 166306
Alignment:
| Q |
10 |
tttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaact |
109 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || |||||||| ||||||||||| ||||||||||||||| |||| ||| | |||||| |
|
|
| T |
166524 |
tttttccaccaagactttctattgaaataggtccaaataaatccatgtgtagtagttcaaggggtctttttgttgaaatattatcttgtggaggaaaact |
166425 |
T |
|
| Q |
110 |
gcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttg |
209 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| |||||||| |||||||| |||||||||||||||||||||| ||| ||| |||| ||||| |
|
|
| T |
166424 |
acttttgacttgttttcccttgacacatgcttcacatattttatctttttcaaagttgatcttaggaagtcctcttactatatcaagtcttgatattttc |
166325 |
T |
|
| Q |
210 |
gaaatagtatccatactta |
228 |
Q |
| |
|
|| || || |||||||||| |
|
|
| T |
166324 |
gagattgtttccatactta |
166306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 609988 - 609761
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||| |||||||| || | |||||| | |||||||||||||| ||||||||||| |
|
|
| T |
609988 |
agccatattttttgccaccaagactttctattgagataggtccaaataaatctatgtgaagtaattcaagaagtctttttgttgaaatgaattcttttgg |
609889 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
609888 |
aggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
609789 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
609788 |
gatattctggaaattgtttccatactta |
609761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 14641639 - 14641715
Alignment:
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||| ||| ||||| ||||| || ||||| |||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
14641639 |
gcttcacatattttatttttatcaaaatttatttttggaagacctcttactaagtctagttgtgaaatttttgaaat |
14641715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 15178749 - 15178563
Alignment:
| Q |
42 |
ccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccc-cttgatacatgct |
140 |
Q |
| |
|
||||||| |||||||| || |||||||| || || || ||||||| ||| || |||| |||||||||||| |||||||| || |||| |||| ||| |
|
|
| T |
15178749 |
ccaaatagatctatgtgaagtagttcaagaggtctcttagttgaaacaaaatcatttgttttaaaactgcttttaacttgtttacctcttg-tacaagct |
15178651 |
T |
|
| Q |
141 |
tcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||||| |||| || ||||| | || || |||||||||||||| ||||| ||||| || ||||| |||||||| | |||||||| |
|
|
| T |
15178650 |
tcgcatattctatcattttcaaaatcaatttttggaagtcctcttacaagatccagtttggagatttttgaaatagttttcatactta |
15178563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24992309 - 24992082
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||||||| |||| |||||||| || |
|
|
| T |
24992309 |
agccatattttttgccaccaagactttccattgagataggtccaaataaatctatgtgaagtagttcaagaggcctttttgttaaaatgaattctttggg |
24992210 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| |||||| |||||||||||||| || ||| |||||||||||||| ||||| |||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
24992209 |
aggaaaactacttttgacttgttttcctctgacgcatgcttcacatattttatccttctcatagttaatcttaggaagtcctcttactaaatcaagtttt |
24992110 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| ||||||| || |||||||||| |
|
|
| T |
24992109 |
gatattctggaaattgtttccatactta |
24992082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 104 - 228
Target Start/End: Complemental strand, 1794136 - 1794012
Alignment:
| Q |
104 |
aaaactgcttttgacttgtttccc-cttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttga |
202 |
Q |
| |
|
|||||| |||||||||||||| || |||| | ||||||||||| || |||||||| ||| | |||| || ||||| ||||| |||||||| |||| || |
|
|
| T |
1794136 |
aaaactacttttgacttgttttcctcttg-tgcatgcttcacagattttatctttttcataacttatttttggaagccctctaactagatcaagttggga |
1794038 |
T |
|
| Q |
203 |
aattttggaaatagtatccatactta |
228 |
Q |
| |
|
|||||| |||||||| | |||||||| |
|
|
| T |
1794037 |
aatttttgaaatagttttcatactta |
1794012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0500 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0500
Description:
Target: scaffold0500; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 9199 - 8972
Alignment:
| Q |
1 |
agccatatctttttccaccaagactttctattgagataggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttgg |
100 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||| ||||||||| |||||||| || |||||||| || |||||||||||||| || |||||||| |
|
|
| T |
9199 |
agccatattttttgccaccaagactttctattgagatagatccaaataaatctatgtgaagtagttcaagagggctttttgttgaaatgaaatcttttgg |
9100 |
T |
|
| Q |
101 |
ggaaaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagtttt |
200 |
Q |
| |
|
| ||| || ||||| |||||||| || ||| ||||||||||||||||||| ||||| |||| |||||||||||||||||||||| ||| |||||| |
|
|
| T |
9099 |
aggaaagctacttttaacttgttttcctctgacgcatgcttcacatatcttattcttctcctagttaatcttaggaagtcctcttactaaatcaagtttt |
9000 |
T |
|
| Q |
201 |
gaaattttggaaatagtatccatactta |
228 |
Q |
| |
|
|| ||| | ||||| || |||||||||| |
|
|
| T |
8999 |
gatattctagaaattgtttccatactta |
8972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1922 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1922
Description:
Target: scaffold1922; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 159
Target Start/End: Complemental strand, 401 - 282
Alignment:
| Q |
40 |
gtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacatgc |
139 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| |||||| ||||| |||||||| ||||||| |||| | |
|
|
| T |
401 |
gtccaaataagtctatgtgtaatagttcaaggggtcttttcgttgaaataaaatcttttggatgaaaactacttttaacttgttttcccttgacacatcc |
302 |
T |
|
| Q |
140 |
ttcacatatcttatctttct |
159 |
Q |
| |
|
||| ||||||||||| |||| |
|
|
| T |
301 |
ttcccatatcttatccttct |
282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 38 - 214
Target Start/End: Complemental strand, 260088 - 259912
Alignment:
| Q |
38 |
aggtccaaataagtctatgtgtagaagttcaaggggcctttttgttgaaataaattcttttggggaaaaactgcttttgacttgtttccccttgatacat |
137 |
Q |
| |
|
||||| ||||||||||||||| ||||| ||||| || |||||||| |||| || | |||| ||||||||||||||||||||| || | |||| |
|
|
| T |
260088 |
aggtctaaataagtctatgtgaagaagctcaagaggtctttttgtagaaacaatattatttgatttaaaactgcttttgacttgttttcctctagcacat |
259989 |
T |
|
| Q |
138 |
gcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaat |
214 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||| |||||||| | ||||||| ||| ||||| ||||| |
|
|
| T |
259988 |
gcttcacatattttatctttctcaaaattaatttttggaagacctcttaccaagtctagttgtgagatttttgaaat |
259912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 14278913 - 14278996
Alignment:
| Q |
134 |
acatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagt |
217 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || || || ||||| |||||||||| ||||||| ||||||||| |||||||| |
|
|
| T |
14278913 |
acatgcttcacatattttatctttatcaaaattaatttttggaagacctcttactaagtctagttgtgaaatttttgaaatagt |
14278996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0773 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0773
Description:
Target: scaffold0773; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 6189 - 6106
Alignment:
| Q |
134 |
acatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaaattttggaaatagt |
217 |
Q |
| |
|
||||||||||||||| |||||||| ||||| || || || ||||| ||| |||||| ||||||| ||||||||| |||||||| |
|
|
| T |
6189 |
acatgcttcacatattttatctttatcaaaattaatttttggaagaccttttactaagtctagttgtgaaatttttgaaatagt |
6106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 217
Target Start/End: Complemental strand, 19053 - 18940
Alignment:
| Q |
104 |
aaaactgcttttgacttgtttccccttgatacatgcttcacatatcttatctttctcaaagtttatcttaggaagtcctcttactagatctagttttgaa |
203 |
Q |
| |
|
|||||| ||||| ||||||||||| || || || ||||||||||| |||||||| ||| | | | |||||||| ||||| |||||||| ||||| || |
|
|
| T |
19053 |
aaaactacttttaacttgtttcccttttatgcaagcttcacatatgttatctttgtcataactgagtttaggaagacctctaactagatcaagtttggat |
18954 |
T |
|
| Q |
204 |
attttggaaatagt |
217 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
18953 |
agttttgaaatagt |
18940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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